Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0201 ATGAAGAGTGGCAAAGGAAAGGGAGCAGTAAAGAACTCCAGGGAATCATTGAAGCCCGTTGATGACAGAAAAGTTGGAAAGCGAAAGGCTGCAGCTAAACCTGACAGAAGTAGCAAACGGAAGACCAAGGCAAAGAAAGATCCCAACAAACCAAAAAGACCACCCAGTGCTTTCTTTGTCTTCCTCGAGGAGTTCAGAGCAACCTTTAAGAAAGAAAATCCTAGTGTGAAGGCTGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCATGACTGAGGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCGAAACGGAAAGCTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGGCAAGCACAGCGGATGATGGAGATGATGAATCAGACAGGTCCAAATCTGAAGTTAATGATGAAGATGAAGAGGAGGCACACCAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGACAACGACGACGATGAAGACGACTGA 510 0.4549 MKSGKGKGAVKNSRESLKPVDDRKVGKRKAAAKPDRSSKRKTKAKKDPNKPKRPPSAFFVFLEEFRATFKKENPSVKAVSAVGKAGGEKWKSMTEAEKAPYEAKAAKRKAEYEKLMNAYNKKQASTADDGDDESDRSKSEVNDEDEEEAHQEEEEEEEEEDDNDDDEDD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0201 169 Coils Coil 140 169 - -
Prci12g0201 169 MobiDBLite consensus disorder prediction 90 107 - -
Prci12g0201 169 MobiDBLite consensus disorder prediction 138 169 - -
Prci12g0201 169 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
Prci12g0201 169 SMART hmgende2 50 121 IPR009071 -
Prci12g0201 169 SUPERFAMILY HMG-box 37 121 IPR036910 -
Prci12g0201 169 MobiDBLite consensus disorder prediction 1 56 - -
Prci12g0201 169 MobiDBLite consensus disorder prediction 33 48 - -
Prci12g0201 169 MobiDBLite consensus disorder prediction 8 32 - -
Prci12g0201 169 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Prci12g0201 169 MobiDBLite consensus disorder prediction 119 169 - -
Prci12g0201 169 CDD HMG-box_AtHMGB1-like 52 112 - -
Prci12g0201 169 Coils Coil 102 122 - -
Prci12g0201 169 MobiDBLite consensus disorder prediction 82 107 - -
Prci12g0201 169 Gene3D High mobility group box domain 34 135 IPR036910 -
Prci12g0201 169 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 154 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0201 Prci-Chr12 1534063 1537083 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci12g0201 HMG_box 2e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0201 K25507 - mof:131167286 207.223