Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0200 ATGCGCAAGTCTTTCAAGGATTCCCTGAAAGCTCTTGAAGCTGATATCCAGTTCGCCAATACTCTAGCTTCTGATTATCCAAGAGATTATGATGGTGCCTGCATACAAATGAGATTGTCCTACAGTCCAGCAGCTCAATTGTTTCTTTTTCTGGTTCAGTGGACTGATTGTCACCTCGCTGGAGCCTTGGGATTGCTTAGAATTCTCATATACAAGGCATACGAGGATGGTAAGACAACAATGTCCATTTATGAGCGAAAAGCCAGTCTGAAGGAGTTCTATTGTGTGATCTTTCCCTCTTTATTGCAACTCCACAGAGGAATTACTGATGTAGAAGACAGAAAACAAAAAGAAATATGTGCTACTAAGTATAACTCAAAACCTGTAGTAAGCAAAGGAAAGCATTCTCAAATTGACATAGAGAGAGAGGAAGAATGTGGTATTTGCATGGAGGTGAACAGCAAGATTGTATTGCCTAATTGCAATCACTCGATGTGCATGAAATGTTATCGAGACTGGCATGCCCGATCTCAGTCTTGCCCTTTCTGCCGGGACAGTCTGAAAAGAGTGAACTCTGGTGACCTTTGGATCTACATGAACAACAATGAGATAGATGACATGGCTTCAATCACAAAGGAGAATTTAAAGAGGTTATTCATGTACATTGAAAAGTTGCCTCTTCTTGTTCCAGATCCAATATTCATGTCTCCTCCTGTCCGCTGGTGA 726 0.4132 MRKSFKDSLKALEADIQFANTLASDYPRDYDGACIQMRLSYSPAAQLFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTMSIYERKASLKEFYCVIFPSLLQLHRGITDVEDRKQKEICATKYNSKPVVSKGKHSQIDIEREEECGICMEVNSKIVLPNCNHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLWIYMNNNEIDDMASITKENLKRLFMYIEKLPLLVPDPIFMSPPVRW 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0200 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Prci12g0200 241 SUPERFAMILY RING/U-box 136 189 - -
Prci12g0200 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 193 IPR013083 -
Prci12g0200 241 PANTHER RING FINGER PROTEIN 41, 151 3 234 - -
Prci12g0200 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Prci12g0200 241 SMART ring_2 146 183 IPR001841 -
Prci12g0200 241 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Prci12g0200 241 FunFam RING/U-box superfamily protein 127 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0200 Prci-Chr12 1529254 1532718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0200 90 188 C3H Transcription Factor Family AT5G01960 29.808 7.05e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0200 K25840 - pop:7466068 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2407 13 38465863 38469068 Prci12g0200 12 1529254 1532718 CCT