Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0184 ATGGCGGACTCACATTCCGCTACATTTCCACCTCCTGTTGCTTCCTCTTCTTCTACTGCCATTCGGGATCCTTCTGGAGCTTCTTCGTCGTCCACTCCAGGATCTTCACGAGTCCCCCGCCAAGAGGAAAGTCGAAGTCATCATCCTCGATCTCAATCCCCTGGTCGAGAGCAGCATAATTTAAGCGTCATCGATTGGACATATCAAAATGCGTCTTCAGTGGCCAGGGATGATTCATGGTCCTGTATCGTTGTTCTTTTCACCTTTTGGTTCTTCGTGTCGATGACTATGATACTTGGAGTTTACGGGTCAATGAACCTCCTGCTTGGTCCAAGTGCTTCTCTTCTTCTCCAACCTAACCCCATATTCGTCCAATATATAAAGGTAGAAAGCTTAGATTCGAAGCCAGGAGTCATGCTCTATGGTACATACGGAACCCCCGCTCTTGATGTTTTCACTATTTGGACTGAAACTCGCAATGTAACTGTTCCATCTGAAGGGCATGAGGAATGGAAATATTACCTGAATGAAGGGTCTCAAGTAAATATTTCATATCGCATGAGCTCTGAGAGCCCCTCTATTGTTCTTGTAATTGCAGAAGGGGATAAAGGCCTCTCTCAGTGGCTGGACTATCCATCATATCCTAAAAGCACTCTTTCATGGAACATTATCCATGGAGCTGGTATGATAACACAGGACATATTCAGTTCATCGAACTATTATTTGGCACTAGGAAATCTGAACGAGGAGGAGGCAGAGGTGGAACTGATCATCAGAGTAAGGGCGGCCATGTATAATACAACTGATGCTTACTACAAATGTAATTTGACTAGTGACCCATGCGGATTGAGTGTTTTCTTTCCTGATGGGAATGCAGCCGTCTTAACATCTCCTGGACCACAACAGAACACATCCACAAATCAGTGGTATATCAAATTGTCCTATGGACCAAGATGGGTCACATATATTTTTGGCATGGGTGGATTGACTTTGCTTATTTTTTTGGCCTTCAACTACCTTAACAAGCTCCATTATTCTCAAGAAGATAGCGTAGGAGTTAGACATGAGGGAACAGTACCTCTAGGAGTCCCTTTGCTTTCTCACAAAGATGATGATCTTTCCAGCTTGGGTTCATCATATGAATCCATGTCACAAGATGAGGAGGATCTTAGCTTTCTTACGGGGGATTCTATTAATGGGAAGTCATTAGCTGATGGTGAAACCGGTAATAATACAAGGCGCCTCTGTGCAATATGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCTTGCGGACACTGCGTGGCTTGTTTTGAATGTGCAACAAGGTTAGCAGAGGCAGACGGTACTTGCCCTGTATGCCGCAGGAACATGAAGAAAGTGAGAAAGATATTTACTGTTTGA 1404 0.443 MADSHSATFPPPVASSSSTAIRDPSGASSSSTPGSSRVPRQEESRSHHPRSQSPGREQHNLSVIDWTYQNASSVARDDSWSCIVVLFTFWFFVSMTMILGVYGSMNLLLGPSASLLLQPNPIFVQYIKVESLDSKPGVMLYGTYGTPALDVFTIWTETRNVTVPSEGHEEWKYYLNEGSQVNISYRMSSESPSIVLVIAEGDKGLSQWLDYPSYPKSTLSWNIIHGAGMITQDIFSSSNYYLALGNLNEEEAEVELIIRVRAAMYNTTDAYYKCNLTSDPCGLSVFFPDGNAAVLTSPGPQQNTSTNQWYIKLSYGPRWVTYIFGMGGLTLLIFLAFNYLNKLHYSQEDSVGVRHEGTVPLGVPLLSHKDDDLSSLGSSYESMSQDEEDLSFLTGDSINGKSLADGETGNNTRRLCAICFDAPRDCFFLPCGHCVACFECATRLAEADGTCPVCRRNMKKVRKIFTV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0184 467 MobiDBLite consensus disorder prediction 1 58 - -
Prci12g0184 467 Pfam Domain of unknown function (DUF4792) 138 205 IPR032008 -
Prci12g0184 467 Pfam Domain of unknown function (DUF4793) 229 335 IPR032010 -
Prci12g0184 467 FunFam E3 ubiquitin-protein ligase APD2 405 466 - -
Prci12g0184 467 ProSiteProfiles Zinc finger RING-type profile. 416 455 IPR001841 -
Prci12g0184 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 467 IPR013083 -
Prci12g0184 467 PANTHER OS05G0521000 PROTEIN 50 467 - -
Prci12g0184 467 MobiDBLite consensus disorder prediction 1 39 - -
Prci12g0184 467 MobiDBLite consensus disorder prediction 40 54 - -
Prci12g0184 467 SUPERFAMILY RING/U-box 415 461 - -
Prci12g0184 467 SMART ring_2 416 454 IPR001841 -
Prci12g0184 467 Pfam Zinc finger, C3HC4 type (RING finger) 413 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0184 Prci-Chr12 1419291 1428134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0184 389 464 C3H Transcription Factor Family AT3G06140 31.579 2.33e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0184 - - tpra:123891971 540.806