Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0011 ATGGCTAATTCTGTGAGACAAAATCAATCCTTTGCGTCTGAGGAGGATGATTTGCTTGTTGATGGTGATACCCCCTTTTGGTTATTGCAGCGTGCCAGTACCCATACTACCCCTAGTGAGTCTCTAAGATGGAGGCGGGTTTTATCTGATACCGATAGTGATGGCTTTGATAATTGGAGTTCTCTTTATGGTGAGAATGAATCAAATGCAAGTGTTAGGCGCTACAGAGTCCCCAATGGCGAGGTTGATTCCTTCTCTTTCAGTGCTTATGGAGGTGACTCTGAAGTGTCTATGGATAGATATAGTCTTGTAGGTACAGGAATCTTAAATTTACAAGATGAGGGAGATGAGTTTGACAGTGACACTGATATAGATCCAATGCATGCTGCCCTTAGCCATTGGAATTCTGATGATATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAGAATGGGAAGTTGCTGGGGCTGAGGAAGCTGAAGCCACTGCCCGCCTTCAAATATTTTTTACCTCAAGCCCAAGTGAGACAAGTGGCCCCATTAATTGGGACCCACAGTTTCATTTTCCTGAGTCTGAGGAAGTATTAAGCAGCAGAGTTAGGGATAGAGGGCAAACTTACACTGATCACAGCTCCAATTACTTGGAGGAGGCACGTTCACCTCCTTTTGGTACAACTTTTGGGGATTATCTTGATGCTAGACAATTTGAAGATCTACTTGAGCACCTTGCTGGGAATGACAACTCAAGACGAGGAGCACCTCCTGCAGCAGTGTCTTTTGTACGTAGTCTGCCCCGTATTGTTATAAGCAAAGAACATGAGAAGTATGATGAACTTGCATGTGCCATTTGCAAGGATGCTTTGGCCACAGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTTTTTCATGCTTGCTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCCCTTTGTCGTTATGAGCTCCCAACAGATGATAAGGATTATGAGGATGGAAAGTGCAATATCAACATTAGAAATGAGATCCATGAAGTGCAGCAGCTAGATGTGATGAGTGGTAATTCTTTTGATGGAGCTGAAGCTAATGAAGAGGATGGTACTGAACAAGGTGGATTGCAGCAAAGCGAGCTCGTGAACATGGTTCCTTTAGATAATCCTTCTGTAGCAAGTGGCGGTAGAGGAAGATGGTTTTTCCTTGCTGCTGCTCCAATTGTTAGTCTTGTGGGTATTGTTATTGTCTTATGGTTAGGCAACCCTTTAATTGAAGGTAGTAGACAGCTGGACTGCCACAACTTACAGGGCCAAAATCAGCATCAGGTTCATGTTTCTGCCTCACCCAACCATGGGGAGGATAGAAGCAGAAGATGGTGGTGTTTTTTCTAG 1401 0.4483 MANSVRQNQSFASEEDDLLVDGDTPFWLLQRASTHTTPSESLRWRRVLSDTDSDGFDNWSSLYGENESNASVRRYRVPNGEVDSFSFSAYGGDSEVSMDRYSLVGTGILNLQDEGDEFDSDTDIDPMHAALSHWNSDDMEEEEEEEEEEEEEREWEVAGAEEAEATARLQIFFTSSPSETSGPINWDPQFHFPESEEVLSSRVRDRGQTYTDHSSNYLEEARSPPFGTTFGDYLDARQFEDLLEHLAGNDNSRRGAPPAAVSFVRSLPRIVISKEHEKYDELACAICKDALATGTEVNQLPCSHLFHACCILPWLSARNSCPLCRYELPTDDKDYEDGKCNINIRNEIHEVQQLDVMSGNSFDGAEANEEDGTEQGGLQQSELVNMVPLDNPSVASGGRGRWFFLAAAPIVSLVGIVIVLWLGNPLIEGSRQLDCHNLQGQNQHQVHVSASPNHGEDRSRRWWCFF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0011 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 332 IPR013083 -
Prci12g0011 466 ProSiteProfiles Zinc finger RING-type profile. 284 325 IPR001841 -
Prci12g0011 466 MobiDBLite consensus disorder prediction 133 155 - -
Prci12g0011 466 SMART ring_2 284 324 IPR001841 -
Prci12g0011 466 SUPERFAMILY RING/U-box 268 338 - -
Prci12g0011 466 MobiDBLite consensus disorder prediction 137 155 - -
Prci12g0011 466 Pfam Ring finger domain 283 325 IPR001841 -
Prci12g0011 466 Coils Coil 136 156 - -
Prci12g0011 466 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 329 - -
Prci12g0011 466 FunFam E3 ubiquitin-protein ligase RING1-like 245 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0011 Prci-Chr12 93339 96513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0011 31 466 C3H Transcription Factor Family AT5G01980 44.266 1.85e-105 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0011 - - gmx:100797923 572.007