Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci12g0010 ATGTCTGCAGATTCTGAGGGCACTTCATCTGCATTAAATCAGTCTAATTCTCAGGTTTTTGAGGACACTGCCCTGCTATTTGACCATCCTTCCCAGACTGCATTATGTGCTCTCTGCCAAAGGGTCCTATCACGTGATATTGAGATAACGAATGATCTTGCACCCATTGGTGTATGTGGTGATTGTAAATTTTTATTACTTGAAGATTTTGGGACCCATTACCAAAACCGTCAAACATTGCATAGGGGAGGATCCAGGTACAGCAGTTCTGAATCAATTGAGAATGGTTTGTCATATCAGCTCCCCAGCATGGCTAATTCTGTGAGACAAAATCAATCCTTTGCGTCTGAGGAGGATGATTTGCTTGTTGATGGTGATACCCCCTTTTGGTTATTGCAGCGTGCCAGTACCCATACTACCCCTAGTGAGTCTCTAAGATGGAGGCGGGTTTTATCTGATACCGATAGTGATGGCTTTGATAATTGGAGTTCTCTTTATGGTGAGAATGAATCAAATGCAAGTGTTAGGCGCTACAGAGTCCCCAATGGCGAGGTTGATTCCTTCTCTTTCAGTGCTTATGGAGGTGACTCTGAAGTGTCTATGGATAGATATAGTCTTGTAGGTACAGGAATCTTAAATTTACAAGATGAGGGAGATGAGTTTGACAGTGACACTGATATAGATCCAATGCATGCTGCCCTTAGCCATTGGAATTCTGATGATATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAGAATGGGAAGTTGCTGGGGCTGAGGAAGCTGAAGCCACTGCCCGCCTTCAAATATTTTTTACCTCAAGCCCAAGTGAGACAAGTGGCCCCATTAATTGGGACCCACAGTTTCATTTTCCTGAGTCTGAGGAAGTATTAAGCAGCAGAGTTAGGGATAGAGGGCAAACTTACACTGATCACAGCTCCAATTACTTGGAGGAGGCACGTTCACCTCCTTTTGGTACAACTTTTGGGGATTATCTTGATGCTAGACAATTTGAAGATCTACTTGAGCACCTTGCTGGGAATGACAACTCAAGACGAGGAGCACCTCCTGCAGCAGTGTCTTTTGTACGTAGTCTGCCCCGTATTGTTATAAGCAAAGAACATGAGAAGTATGATGAACTTGCATGTGCCATTTGCAAGGATGCTTTGGCCACAGGCACTGAAGTAAATCAACTTCCCTGCTCTCACCTTTTTCATGCTTGCTGCATTTTGCCATGGTTGAGTGCACGAAATTCATGCCCCCTTTGTCGTTATGAGCTCCCAACAGATGATAAGGATTATGAGGATGGAAAGTGCAATATCAACATTAGAAATGAGATCCATGAAGTGCAGCAGCTAGATGTGATGAGTGGTAATTCTTTTGATGGAGCTGAAGCTAATGAAGAGGATGGTACTGAACAAGGTGGATTGCAGCAAAGCGAGCTCGTGAACATGGTTCCTTTAGATAATCCTTCTGTAGCAAGTGGCGGTAGAGGAAGATGGTTTTTCCTTGCTGCTGCTCCAATTGTTAGTCTTGTGGGTATTGTTATTGTCTTATGGTTAGGCAACCCTTTAATTGAAGGTAGTAGACAGCTGGACTGCCACAACTTACAGGGCCAAAATCAGCATCAGGTTCATGTTTCTGCCTCACCCAACCATGGGGAGGATAGAAGCAGAAGATGGTGGTGTTTTTTCTAG 1710 0.4444 MSADSEGTSSALNQSNSQVFEDTALLFDHPSQTALCALCQRVLSRDIEITNDLAPIGVCGDCKFLLLEDFGTHYQNRQTLHRGGSRYSSSESIENGLSYQLPSMANSVRQNQSFASEEDDLLVDGDTPFWLLQRASTHTTPSESLRWRRVLSDTDSDGFDNWSSLYGENESNASVRRYRVPNGEVDSFSFSAYGGDSEVSMDRYSLVGTGILNLQDEGDEFDSDTDIDPMHAALSHWNSDDMEEEEEEEEEEEEEREWEVAGAEEAEATARLQIFFTSSPSETSGPINWDPQFHFPESEEVLSSRVRDRGQTYTDHSSNYLEEARSPPFGTTFGDYLDARQFEDLLEHLAGNDNSRRGAPPAAVSFVRSLPRIVISKEHEKYDELACAICKDALATGTEVNQLPCSHLFHACCILPWLSARNSCPLCRYELPTDDKDYEDGKCNINIRNEIHEVQQLDVMSGNSFDGAEANEEDGTEQGGLQQSELVNMVPLDNPSVASGGRGRWFFLAAAPIVSLVGIVIVLWLGNPLIEGSRQLDCHNLQGQNQHQVHVSASPNHGEDRSRRWWCFF 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci12g0010 569 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 434 IPR013083 -
Prci12g0010 569 SUPERFAMILY RING/U-box 371 441 - -
Prci12g0010 569 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 249 432 - -
Prci12g0010 569 Pfam Ring finger domain 386 428 IPR001841 -
Prci12g0010 569 SMART ring_2 387 427 IPR001841 -
Prci12g0010 569 MobiDBLite consensus disorder prediction 240 258 - -
Prci12g0010 569 MobiDBLite consensus disorder prediction 236 258 - -
Prci12g0010 569 Coils Coil 239 259 - -
Prci12g0010 569 ProSiteProfiles Zinc finger RING-type profile. 387 428 IPR001841 -
Prci12g0010 569 FunFam E3 ubiquitin-protein ligase RING1-like 348 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci12g0010 Prci-Chr12 93339 96515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci12g0010 33 569 C3H Transcription Factor Family AT5G01980 41.712 2.46e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci12g0010 - - gmx:100797923 660.988