Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1294g0001 ATGTCGGGATCAGAGACAGGAGTGATGGCCAGTATGGAGTCCTTAAACGTGAGGCATCAGAATAGTCCGGCACCATCACAACCAGTCTTGCAAAACATAAGCATGGCCTACGGTGCTGATGGCACGACCGAGTACAAGCATCTTGCTGCTATTACCCCACCAACCTACCACTCCTCAACCGCTGTCACTGGCACTATTATTAACGGCACCGATGCCGGGCAGGGGGGCGGAACATCAGGAATCAACGTCAACATGGTCAGTGAGCCGCTGAAGAGGAAGAGAGGGAGGCCGAGGAAATACGGGCCAGATGGCGCCATGGCATTGGTCTCGGAGCCCAAACCTCTCGCGGTTTCCGTGAACCAGTCCAGCGGAGGACCTGCGTCACCCACTTCCACGTCCTTGAAGAAAGTCAGAGGCAGACCCCCCGGTTCCAGTAAGAAGCAACAGTCGGAGGTTCTTGGATCAGCTGGACTTGGATTTACACCACACGTTATTACTGTGAAAGCTGGAGAGGACGTGTCATCAAAAATCATGTCCTTTTCTCAGCATGGTCCAAGGGCTGTTTGCATCCTCTCAGCAAACGGAGCCATATCCAATGTGACACTTCGTCAAGCTGCGACATCTGGCGGAACTGTGACTTATGAGGGACGGTTTGAGATCCTATCACTATCTGGTTCTTTTCTTCTATCTGAATATGGTAGTCAGCGGAGTAGAACTGGTGGATTAAGTGTATCCTTGTCTGGACCAGATGGCCGTGTTTTAGGTGGCGGAGTTGCTGGACTTTTGACAGCTGCTTCGCCTGTGCAGGTTGTTGTAGGGAGCTTCATTGCAGATGGTGGGAAGGCACCAAAGTCCGCAAACCAATTGAAAATATTATCTGCCCCCCCAAAGTTGGCACCAGTCAGTGGTCCAGTGGGGCAGAGCAGCTCCCCATCGCGGGGCACTCATAGTGAATCGTCAGGAGGGCCTGAGAGCCCACTTAACCCGAGCACAGGAACAGCCTGCAATAGCAGTAAACTACAAGGCATTTCGTGCATGCCGTGGAAGTAA 1050 0.5267 MSGSETGVMASMESLNVRHQNSPAPSQPVLQNISMAYGADGTTEYKHLAAITPPTYHSSTAVTGTIINGTDAGQGGGTSGINVNMVSEPLKRKRGRPRKYGPDGAMALVSEPKPLAVSVNQSSGGPASPTSTSLKKVRGRPPGSSKKQQSEVLGSAGLGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSEYGSQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGGKAPKSANQLKILSAPPKLAPVSGPVGQSSSPSRGTHSESSGGPESPLNPSTGTACNSSKLQGISCMPWK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1294g0001 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 51 328 IPR039605 GO:0003680
Prci1294g0001 349 MobiDBLite consensus disorder prediction 297 349 - -
Prci1294g0001 349 CDD DUF296 161 275 IPR005175 -
Prci1294g0001 349 Gene3D - 162 294 - -
Prci1294g0001 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 277 - -
Prci1294g0001 349 FunFam AT-hook motif nuclear-localized protein 1-like 162 292 - -
Prci1294g0001 349 MobiDBLite consensus disorder prediction 117 153 - -
Prci1294g0001 349 MobiDBLite consensus disorder prediction 71 105 - -
Prci1294g0001 349 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Prci1294g0001 349 SMART AT_hook_2 135 147 IPR017956 GO:0003677
Prci1294g0001 349 MobiDBLite consensus disorder prediction 303 343 - -
Prci1294g0001 349 ProSiteProfiles PPC domain profile profile. 154 297 IPR005175 -
Prci1294g0001 349 MobiDBLite consensus disorder prediction 71 85 - -
Prci1294g0001 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 162 275 IPR005175 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1294g0001 1 349 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 54.098 5.01e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1294g0001 - - vvi:100263332 416.387