Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1280g0001 ATGCAAAGCAAAAGCAAAAACAAATCACAAGTCCTTATTACAGTCATGGATAAACCCGGCACAGGTAAGGTCGACGCCGAGGGAAGCAGTGGAAGTGGCGGTGGTGTCCGGTACCGGGGAGTGAGGAGGCGGCCATGGGGGAAGTTCGCGGCGGAGATCCGGGACTCTACTAATCAAGGACAGAGGCTGTGGTTGGGGACTTTCGACACGGCGGAGGAAGCAGCCAGGGCGTATGACAGAGCTGCTTATGCCATGAGAGGCTCATTTGCAATCCTCAACTTCCCAAATGAGTACCCTCTCACAGCTGGTCGTTCTAACACTGCAACAACGTCGGCGGCGGCGGCGGCTTCTTCTTCTCACTCGCCGGCTCCTCCTCCTCCTCCTCCTTCAAGGAGCGGCCATGAAGTTTTCGAGTTCGAGTACTTGGACGATAATCTGTTAGAGGAGCTTCTGGATTATGAGGAGAAAAAGAAGGGAAAGTGA 483 0.5424 MQSKSKNKSQVLITVMDKPGTGKVDAEGSSGSGGGVRYRGVRRRPWGKFAAEIRDSTNQGQRLWLGTFDTAEEAARAYDRAAYAMRGSFAILNFPNEYPLTAGRSNTATTSAAAAASSSHSPAPPPPPPSRSGHEVFEFEYLDDNLLEELLDYEEKKKGK 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1280g0001 160 ProSiteProfiles AP2/ERF domain profile. 37 95 IPR001471 GO:0003700|GO:0006355
Prci1280g0001 160 Gene3D AP2/ERF domain 36 96 IPR036955 GO:0003700|GO:0006355
Prci1280g0001 160 CDD AP2 45 96 IPR001471 GO:0003700|GO:0006355
Prci1280g0001 160 SUPERFAMILY DNA-binding domain 37 96 IPR016177 GO:0003677
Prci1280g0001 160 Pfam AP2 domain 37 87 IPR001471 GO:0003700|GO:0006355
Prci1280g0001 160 PANTHER DNA-BINDING DOMAIN 14 155 IPR044808 GO:0003700|GO:0009873
Prci1280g0001 160 MobiDBLite consensus disorder prediction 101 135 - -
Prci1280g0001 160 MobiDBLite consensus disorder prediction 1 39 - -
Prci1280g0001 160 SMART rav1_2 37 101 IPR001471 GO:0003700|GO:0006355
Prci1280g0001 160 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Prci1280g0001 160 MobiDBLite consensus disorder prediction 101 118 - -
Prci1280g0001 160 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Prci1280g0001 160 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1280g0001 37 158 AP2-EREBP Transcription Factor Family AT3G23230 61.789 1.42e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci1280g0001 AP2 2.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1280g0001 - - pcin:129299756 214.157