Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci121g0002 ATGCAAGGGACAAGGGGTAGAATAGGTTCCTTGGCTGAAACCTTGGAATTTGATTGTGGATCTACTTCAAGTAATGCTACCGTGGATCAGCAGATTTGCTGGGATGGCACGAGGAACCCTTTAGAAAATCAAAGCCCTCAAATTATGCTTTCACCTGGTGATGTGAACCCATTGTATGCAAATTCAATTAACCATGAATGGAAGAGCGTCAATAATTGGAGAATTGGTGAGCCAGGTTCCAGTGATTCACATATTGAAATTAACAATGACGAGCAGAAAAGAGAACTTGGATGGTCATCTTCAACGAGTGCTGGTGCTGGATCAAGATTAGGGTGGCAGTTTGAATCAACCAATTTACCTTCATTGGACAATGTCAATACAAGTCCTACGTGTATGAACAACTCCAATCCTCATTCTGTATCACAGAATCTCAACCTAAATGCCAGTTTGGCAGATGCCGGCTTTAATATGGGGCAGCATCTTGAGCATCCTAGCTTGAACAAACCAAGTGGATCAGTAAATGAGCCTATCCCACCTACTGTTGGTCCTGCGCCCTTTGCTCATCCTTCTGGAAGTAACATGGTAGATAATAGTAGTGGTAGGCTGGGGTATTCTACTGATGCCCAGCGTGTATCCTGTAAAAGAAAGGCTGTTGAAGGATATGTTGGACAATCTTCAGAAGGTGAAAGTTCTAGCCGCAGCCAGTACACAGAAAACTGTGCTTGGCATACACTTCCTACTCAGAGTAATTCTTGGAGCAGTTTAAGCAGATCTGCTACATCAGCATTGATAAGTTCAAGACCTGGCCGGGATGTGGGTGATGAATCTTCAGAGAGCATTGATAATTTGAATGTTGCAAGAAGCTCAAATAGCTTCCTGAGGAATTCTCGCTTGAGGATAAATCCTTCAAATCAACAGGATTCCATTCCTTTTGTTGCATTCTCCAATGACAGTGTGACTAGACGTTCTACAATTCCTTCATGTTCTCCTATGACACAAAGTTTTTGTCCTGTTGATGGCTCTATGGATTTGAGGTCAGCGCCATCTGCAGATATCGTTCCACAAAGCCAGCCCTTTGGAACCAGTTCTCCTTTACGCAGGAATATGCCATCATTTAGATGGAGTGGAAGCTCTAACTCAAGAAACAGCCATTTGTCAAACTCAATGATTTGGCCAGACAGGGATACTCAACTATATGAAGAAGGAAGCTCAAGAAGCATGTCTAGAAGCATAAATGATCCAATGTTTGTTCCAGTGGCTGATTTAAGAAATTCGGTTCGGAGTCCAACCAATAGAGCTTCAAGTAGTGCAAATTTAAATATATCAGGAAATGTTACTTCCTCACCGCATACTGGATTGAGTTCAGCCTTCAATTTACCATCTATTCCATCCTGGGTTTCTCGTCCCAATCCTCTACATCATCCACGGAGGTTATCTGATTATGTTCATCGATCATTGTTGTCATCTGTTTCTGAGGCTGCTGGAGGTTTCAGCAATAGCAATTCTTTCTTGCGCTCTGCTCCTATCACTTTATCTGAAGCAAGGGCACCATCATCTCGAGCTGGAAGTCAAGGACGTCATCAATCGCACTCAATATCACCATGGGTGGAGAGGCGAGGTGATAGCAACTTCAGGCTTCCCTATTCATTGCAAACTCTGGCTGTTGCCAGTGAAGGAAGTGGTAGACTTGGATCTGAGGATTTTATGATCTTTGACCATTCAGTATTTTCTGGAATGGCTGATATTCATGACCGACATAGGGACATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCCCTGGAAGAACGGATTGGAAATGTGAGTACTGGATTGAGCGAGGAAACTGTATTGAAACTAATGAAACGGAGGAAGTATTCAGTTGAAGAAGGGTCTCAATGCGAGGCAGAACCCTGCTGTATTTGTCAGGAAGAGTTTGACAACGGGGATGATGTTGGAACGCTTGATTGTGGCCATGACTACCATACGAACTGCATCAAACAGTGGCTAATGCAGAAGAATCTGTGCCCCATTTGTAAGACAACAGGCTTGGCAACTTGA 2070 0.4338 MQGTRGRIGSLAETLEFDCGSTSSNATVDQQICWDGTRNPLENQSPQIMLSPGDVNPLYANSINHEWKSVNNWRIGEPGSSDSHIEINNDEQKRELGWSSSTSAGAGSRLGWQFESTNLPSLDNVNTSPTCMNNSNPHSVSQNLNLNASLADAGFNMGQHLEHPSLNKPSGSVNEPIPPTVGPAPFAHPSGSNMVDNSSGRLGYSTDAQRVSCKRKAVEGYVGQSSEGESSSRSQYTENCAWHTLPTQSNSWSSLSRSATSALISSRPGRDVGDESSESIDNLNVARSSNSFLRNSRLRINPSNQQDSIPFVAFSNDSVTRRSTIPSCSPMTQSFCPVDGSMDLRSAPSADIVPQSQPFGTSSPLRRNMPSFRWSGSSNSRNSHLSNSMIWPDRDTQLYEEGSSRSMSRSINDPMFVPVADLRNSVRSPTNRASSSANLNISGNVTSSPHTGLSSAFNLPSIPSWVSRPNPLHHPRRLSDYVHRSLLSSVSEAAGGFSNSNSFLRSAPITLSEARAPSSRAGSQGRHQSHSISPWVERRGDSNFRLPYSLQTLAVASEGSGRLGSEDFMIFDHSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKLMKRRKYSVEEGSQCEAEPCCICQEEFDNGDDVGTLDCGHDYHTNCIKQWLMQKNLCPICKTTGLAT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci121g0002 689 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
Prci121g0002 689 FunFam E3 ubiquitin-protein ligase MBR2 610 687 - -
Prci121g0002 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 165 687 IPR045191 GO:0061630
Prci121g0002 689 Pfam Ring finger domain 642 683 IPR001841 -
Prci121g0002 689 SUPERFAMILY RING/U-box 627 685 - -
Prci121g0002 689 MobiDBLite consensus disorder prediction 514 536 - -
Prci121g0002 689 SMART ring_2 642 682 IPR001841 -
Prci121g0002 689 MobiDBLite consensus disorder prediction 514 531 - -
Prci121g0002 689 MobiDBLite consensus disorder prediction 158 207 - -
Prci121g0002 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Prci121g0002 689 MobiDBLite consensus disorder prediction 191 206 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci121g0002 1 689 C3H Transcription Factor Family AT2G15530 31.932 4.55e-71 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci121g0002 - - pcin:129295490 1347.03