Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2901 ATGCAAATTCTACCTGATATCAAAAGGCAAGTTATGGTAAAGCTTCAGCCAAACATGAAGAGAGATTCAAAGAAAGCGAAGACAACGTTCAGAGATGGAGAGATGCTTTGTTGCAAGTTAGCAACTTGTCAGGGTGGGATACCAGGGGCCGGAGGTCTTCCTTTGGCACTTCATGTTTTAGGTACTTTTTTGCGTGGAAGAAGTATGCCTGAGTGGAAAGATGCCTTAGACAAGCTAAAGAAAATTCCAGATGATAATATTCTTCAGATACTCAAAATCAGCTATGATGGATTAAATGATGAAGAAAAGACCATATTTTTGGATATTGCTTGCTTCTTCAGAGAACAGAGGAAAGAAGAAGTAATCCAAATTTTGAAAAATTGTGATCTTTTTCCAACAATTGAGATAAATATTTTGATGGAGAAAGCTTTACTAGTTGAAAAGAAGGATTCGTGTGGAGAGTGTATATTAGAAATGCATGATTTACTTCAAGAATTGGGAAGGAACATAGTTTTTCAAGAATCTCCTAGTAATGTTGGGAGACGAAGTAGGTTGTGGAAATTAGAGGACATTCATGAAATTTTGAAAAATAATACGGGATCTGAAGCAATGCAAGCAATTGTTATGCGCCCAAACCTACATGAATTAGAAGTAAATCCTAAATCCTTTTCTAAGATGACTAATCTTAAATTACTCATCTTACCGTGGGAGGTGAAACTTTCGTATGATCTCAAATGTTTTCCTCGTGCAATAAAAGTTGTTCAATGGTATTCATTTCCTTTAGAAGCTCTTCCACTTCAAATTCCATTGGATAAACTTGTCGATATTAACATGCATCGTAGCAAAATAAAGCAACTACGGAATGGCTTACTGTTTATGCAAAATTTGAAGTTCATTGATATGAGAGGTTCTGAAGATTTGGTTGAAACTCCGGATTTCTCAGGAGTCCCAAATTTAGAAAAATTGATTTTGGATGGATGCTCATCCTTGGTTGCCGTTCATCCTTCACTTGGAGAACTGAAAAAGGTTGTTGAAGTGAGTTTACGTTGGTGCACAAGTCTTGAAATCCTTCCAAGAAAATTGGAAATGAATTCTTTGATGAAGTTAAGTCTTTTCTTTTGCTGTAGAGTTTTTATGCTCCCCGAGTTTGTAGAAAATATGAAAAAATTATCATCCCTTAATTTAAGTCATACTGCTATAACCAATCTTCCTGAATCACTTGGATTCTTGATTGGTCTAAGAGATCTGAATTTGAGTGGATGCAATATTGCTGGTTGCTCAAAAGGATTTAAGCTGCCAAAAAATCTGAATGATCATGAGGCTTTGAGAGAACATGACATCTGTGAAGCTTGGAGTAACAAGAGGGAACTCAATGTGTCAACTTGGAGTAATTTACATCACATTTTTGAAGTTAATCTAACATCATTATCAGAGTTAGACTTGAGCTACTGTTGCATTAGTGATGACTCACTTCCAGATGATTTTGGCGGTTTACCATCATTAATTGCATTAGATTTGGGATATAATGATTTCGTTAATATGCCATCTGGTTGCTTCTCTAAACTTTTTCATCTGCACTATCTGTTTTTTTTAATTGCAAAAGGCTCAAGTCACTGCCAAATCTTCCACCACGGTTAA 1638 0.3584 MQILPDIKRQVMVKLQPNMKRDSKKAKTTFRDGEMLCCKLATCQGGIPGAGGLPLALHVLGTFLRGRSMPEWKDALDKLKKIPDDNILQILKISYDGLNDEEKTIFLDIACFFREQRKEEVIQILKNCDLFPTIEINILMEKALLVEKKDSCGECILEMHDLLQELGRNIVFQESPSNVGRRSRLWKLEDIHEILKNNTGSEAMQAIVMRPNLHELEVNPKSFSKMTNLKLLILPWEVKLSYDLKCFPRAIKVVQWYSFPLEALPLQIPLDKLVDINMHRSKIKQLRNGLLFMQNLKFIDMRGSEDLVETPDFSGVPNLEKLILDGCSSLVAVHPSLGELKKVVEVSLRWCTSLEILPRKLEMNSLMKLSLFFCCRVFMLPEFVENMKKLSSLNLSHTAITNLPESLGFLIGLRDLNLSGCNIAGCSKGFKLPKNLNDHEALREHDICEAWSNKRELNVSTWSNLHHIFEVNLTSLSELDLSYCCISDDSLPDDFGGLPSLIALDLGYNDFVNMPSGCFSKLFHLHYLFFLIAKGSSHCQIFHHG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2901 545 SUPERFAMILY L domain-like 159 530 - -
Prci11g2901 545 ProSitePatterns Zinc finger C2H2 type domain signature. 421 445 IPR013087 -
Prci11g2901 545 Gene3D - 49 99 IPR042197 -
Prci11g2901 545 Gene3D Ribonuclease Inhibitor 167 385 IPR032675 -
Prci11g2901 545 SMART LRR_typ_2 387 410 IPR003591 -
Prci11g2901 545 SMART LRR_typ_2 498 521 IPR003591 -
Prci11g2901 545 SMART LRR_typ_2 473 497 IPR003591 -
Prci11g2901 545 SUPERFAMILY "Winged helix" DNA-binding domain 86 196 IPR036390 -
Prci11g2901 545 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 50 397 IPR044974 GO:0006952
Prci11g2901 545 Gene3D Ribonuclease Inhibitor 386 542 IPR032675 -
Prci11g2901 545 PRINTS Disease resistance protein signature 50 64 - -
Prci11g2901 545 PRINTS Disease resistance protein signature 471 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2901 Prci-Chr11 45640246 45644143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2901 50 537 WRKY Transcription Factor Family AT4G12020 28.827 8.46e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2901 - - pcin:129285347 1086.25