Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2897 ATGCGATTGAGCTTTTCTATGGTAATGGAGGCGCCTTCAGTTTTGAAGAATCCAAGTTTGAATTACCAGATTAACCAGAAAAGTAGTGACCATCAACATCATCATCACCATCATCATGCAGCTGGAGATTCAGAAGAGATTCTTGAGAATATATGGGCTAGAGTTATGATGAGCAGTAATAATGGTGGCATGACAGCAGAAAACGCACCAGAATTCTCAAAATCATGGGAAGGACTTCCAAATCTAGATGGAAGGGTTGACTCTATGGAGATTCTTCAAAGGCTTCCAAGTTTGGGAAGGTGGATATCAATGGGAGCTGAGGCATGGGAAGAAATTTTAGCTGATTTTCCACAAAACCTTCATCATCATCATCATCAAGATACATGCAATAACAATAACAATAGCAATCTGGGAATTTGCAGAAACTTTGAATCCAGTTATAAAATGGTAGAACAGGAAAAAGAAGATGTGAGGGCAAAGAATAAGGAAGGTGAGATCAGAAGACACTACAGAGGAGTGAGAAGAAGGCCATGGGGAAAATATGCAGCAGAAATCAGAGACTCATCAAGGAATGGAGCTAGGCTTTGGCTTGGGACATTTGAGACAGCTGAAGAAGCAGCTTTGGCTTATGATAAAGCAGCTTTGAGGATTAGAGGTCCAAAGGCATATTTGAATTTCCCACTTGACACTGTTGCAAATGCTTTAGGATTTGACCTCAAAAGGGGAAGTGACAGTACTAATCCTAATAATCCTATTATTATTAGTACCAGCTGTGCTTCTTCATCAACTTGTGAAGAGGATTATTCTGCTTGTGGCCGATATGTTGAAAATTGCAACAATTCCAGGAAAAGAAGCTTGAGAAATATTGAAGAACCTGAAGCTAATAAAAGGATGGTGAATTTGGGGAATGAATTAGATGTTGTTGTGTTTCAGGACTTGGGGACTGATTATTTGGAAAGTTTACTATCTTCTTTTTGA 978 0.3916 MRLSFSMVMEAPSVLKNPSLNYQINQKSSDHQHHHHHHHAAGDSEEILENIWARVMMSSNNGGMTAENAPEFSKSWEGLPNLDGRVDSMEILQRLPSLGRWISMGAEAWEEILADFPQNLHHHHHQDTCNNNNNSNLGICRNFESSYKMVEQEKEDVRAKNKEGEIRRHYRGVRRRPWGKYAAEIRDSSRNGARLWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLDTVANALGFDLKRGSDSTNPNNPIIISTSCASSSTCEEDYSACGRYVENCNNSRKRSLRNIEEPEANKRMVNLGNELDVVVFQDLGTDYLESLLSSF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2897 325 PANTHER DNA-BINDING DOMAIN 132 318 IPR044808 GO:0003700|GO:0009873
Prci11g2897 325 ProSiteProfiles AP2/ERF domain profile. 169 227 IPR001471 GO:0003700|GO:0006355
Prci11g2897 325 Gene3D AP2/ERF domain 168 229 IPR036955 GO:0003700|GO:0006355
Prci11g2897 325 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700|GO:0006355
Prci11g2897 325 PRINTS Ethylene responsive element binding protein signature 193 209 IPR001471 GO:0003700|GO:0006355
Prci11g2897 325 Coils Coil 140 167 - -
Prci11g2897 325 CDD AP2 177 227 IPR001471 GO:0003700|GO:0006355
Prci11g2897 325 FunFam Ethylene-responsive transcription factor 2 168 228 - -
Prci11g2897 325 Pfam AP2 domain 169 219 IPR001471 GO:0003700|GO:0006355
Prci11g2897 325 SMART rav1_2 169 233 IPR001471 GO:0003700|GO:0006355
Prci11g2897 325 SUPERFAMILY DNA-binding domain 169 228 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2897 Prci-Chr11 45591147 45592294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2897 46 325 AP2-EREBP Transcription Factor Family AT4G18450 34.985 9.13e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci11g2897 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2897 - - pcin:129287234 615.92