Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2890 ATGGTAATGGAGGCGCCATCAGTTTTGAAGAATCCAAGTTTGAATTACCAGATTAACCAGAAAAGTAGTGACCATCAACATCATCACCATCATCATGCAGCTGCAGATTCAGAAGAGATTCTTGAGAATATATGGGCTAGAGTTATGATGAGCAGTAATAATGGTGGCATGACAGCAGAAAACGCACCAGAATTCTCAAAATCATGGGAAGGACTTCCAAATCTAGATGGAAGGGATGACTCTATGGAGATTCTTCAAAGGCTTCCAAGTTTGGGAAGGTGGATATCAATGGGAGCTGAGGCATGGGAAGAAATTTTAGCTGATTTTCCACAAAACCTTCATCATCATCATCATCATCAAGATACATGCAATAACAATAACAATAGCAATCTGGGAATTTGCAGAAACTTTGAATCCAGTTATAAAATGGTAGAACAGGAAAAAGAAGATGTGAGGGCAAAGAATAAGGAAGGTGAGATCAGAAGACACTACAGAGGAGTGAGAAGAAGGCCATGGGGAAAATATGCAGCAGAAATCAGAGACTCATCAAGGAATGGAGCTAGGCTTTGGCTTGGGACATTTGAGACAGCTGAAGAAGCAGCTTTGGCTTATGATAAAGCAGCTTTGAGGATTAGAGGTCCAAAGGCATATTTGAATTTCCCACTTGACACTGTTGCAAATGCTTTAGGATTTGACCTCAAAAGGGGAAGTGACAGTACTAATCCTAATAATCCTATTATTATTAGTACCAGCTGTGCTTCTTCATCAACTTGTGAAGAGGATTATTCTGCTTGTGGCCGATATGTTGAAAATTGCAACAATTCCAGGAAAAGAAGATTGAGAAATATTGAAGAACCTGAAGCTAATAAAAGGATGGTGAATTTGGGGAATGAATTAGATGTTGTTGTGTTTCAGGACTTGGGGACTGATTATTTGGAAAGTTTACTATCTTCTTTTTGA 960 0.3906 MVMEAPSVLKNPSLNYQINQKSSDHQHHHHHHAAADSEEILENIWARVMMSSNNGGMTAENAPEFSKSWEGLPNLDGRDDSMEILQRLPSLGRWISMGAEAWEEILADFPQNLHHHHHHQDTCNNNNNSNLGICRNFESSYKMVEQEKEDVRAKNKEGEIRRHYRGVRRRPWGKYAAEIRDSSRNGARLWLGTFETAEEAALAYDKAALRIRGPKAYLNFPLDTVANALGFDLKRGSDSTNPNNPIIISTSCASSSTCEEDYSACGRYVENCNNSRKRRLRNIEEPEANKRMVNLGNELDVVVFQDLGTDYLESLLSSF 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2890 319 PRINTS Ethylene responsive element binding protein signature 187 203 IPR001471 GO:0003700|GO:0006355
Prci11g2890 319 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Prci11g2890 319 PANTHER DNA-BINDING DOMAIN 125 312 IPR044808 GO:0003700|GO:0009873
Prci11g2890 319 Coils Coil 134 161 - -
Prci11g2890 319 Gene3D AP2/ERF domain 162 223 IPR036955 GO:0003700|GO:0006355
Prci11g2890 319 Pfam AP2 domain 163 213 IPR001471 GO:0003700|GO:0006355
Prci11g2890 319 CDD AP2 171 221 IPR001471 GO:0003700|GO:0006355
Prci11g2890 319 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
Prci11g2890 319 FunFam Ethylene-responsive transcription factor 2 162 222 - -
Prci11g2890 319 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Prci11g2890 319 SUPERFAMILY DNA-binding domain 163 222 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2890 Prci-Chr11 45495404 45496476 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2890 39 319 AP2-EREBP Transcription Factor Family AT4G18450 35.294 3.46e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci11g2890 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2890 - - pcin:129287234 585.874