Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2889 ATGGCCTCTTCATCCCAGACAGAGCTTCCTCTTAACGAGGACGACTCTCAAGACATGGTGATCTACCAAGTCCTCACTGAAGCCGACGCTCTTCCACGTCATCATCACCTTTCTGCACCAGTTATTGGCCTCCATCAGCCCATCACCAGGACCGTCGCTGCCGTCGCCAAGAAGCACTACCGTGGTGTGAGGCGGCGGCCATGGGGCAAGTTCGCCGCTGAGATCCGAGACTCGGCTCGCCATGGGGCTCGCGTGTGGCTGGGGACGTTTGAGACTGCCGAAGAGGCTGCCTTGGCTTATGACAGAGCTGCTTTCAGAATGAGAGGTTCTAAGGCTCTCCTTAATTTCCCTCCTGACGTTGTAGCTCGTTCCTCTTCTTCTTCATCATCTTCTTCTTCCTCTTCTCTTTACTGCCCAGAAAAATTGAAGAACAAGAGTTCTGATGATTCTGATTCAAAAGCTGTAGTTAGCTCATGCGTGAGTTATGTTGATAGTCATGGTTGA 504 0.5179 MASSSQTELPLNEDDSQDMVIYQVLTEADALPRHHHLSAPVIGLHQPITRTVAAVAKKHYRGVRRRPWGKFAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGSKALLNFPPDVVARSSSSSSSSSSSSLYCPEKLKNKSSDDSDSKAVVSSCVSYVDSHG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2889 167 MobiDBLite consensus disorder prediction 122 141 - -
Prci11g2889 167 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Prci11g2889 167 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Prci11g2889 167 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
Prci11g2889 167 CDD AP2 58 119 IPR001471 GO:0003700|GO:0006355
Prci11g2889 167 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Prci11g2889 167 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Prci11g2889 167 MobiDBLite consensus disorder prediction 122 155 - -
Prci11g2889 167 Gene3D AP2/ERF domain 58 118 IPR036955 GO:0003700|GO:0006355
Prci11g2889 167 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Prci11g2889 167 PANTHER DNA-BINDING DOMAIN 53 152 IPR044808 GO:0003700|GO:0009873
Prci11g2889 167 FunFam Ethylene-responsive transcription factor 2 58 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2889 Prci-Chr11 45471512 45472351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2889 3 159 AP2-EREBP Transcription Factor Family AT4G17500 43.147 1.12e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci11g2889 AP2 9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2889 K13433 - qsa:O6P43_012708 173.711