Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2885 ATGGCTTCTTCTAACAGACACTGGCCCAGCATGTTCAAGTCCAAGCCCTGCAATCCGCAGCACCCATGGCAGCACGACATGAACTCCTCTCTCATCTCTTCTTCTTCTTGCCACCGAACCCCTTACACTTCTTCTTCCTCTTCTTCTTCTACAGGTTGTGAGGAGAGAAGTCCAGAGCCGAAGCCGAGGTGGAACCCAAAACCAGAGCAGATTCGGATTCTGGAAGCGATCTTCAACTCTGGGATGGTGAATCCTCCTAGAGATGAGATCAGAAAGATCAGAGCTCAGCTTCAAGAGTATGGTCAAGTTGGTGACGCGAATGTGTTCTACTGGTTTCAGAATCGCAAGTCCAGAAGCAAACACAAGCTCCGAAACCTTCAAAATTCAAACAAGATCACTGTCAACAACGACAACAACCACCATGTCATCACTCACGAATCAACCCCACCACCTCCTTCTATCATCATTCCTCAGATTTCATCTCCTAATTCTTCTTCATCTGACAACAAGTCTTCTCCTCCCCCTCCTTATTCCAAGGAAATTATCAGTACTATTATTCCTCCTTTCAAGTCGTCGTCGTCATTCTCCATTGGCTTCTCTTCTGATGTGATCCCAAGTTCTCCAAGTAACCATCACCATCATGCCACATATTTTCAGACCCATAATAATGAGACCTCTCTTTCTGAGCCTTTCTTCTTCCCTGTACTGCACCATAATGATACCACTACTGTAACTACGACTGATCATCATCAAGGGTTTTGCTTCTCTGAGCTGTCTGGTCTTGTTCAAGCTCATCAGCCTCATTATCAGAACGTTGGGCCTTGCACTAGTCTCTTGCTCAGTGAGATGATGAATCAGAAGAAAGAACAAGATCAGAAGGAAGTGATGAAGAATAATGTGATGAATCATCATCATCATCAACATCATCATCCGAGTTTCTGTGTGGCAGCTTCGTCTTCTGTCACTCCCACCATTCACAGTACTGTTGTCCCTTCTATGGCTCCTGCCACCACCACCACTGTTATTGTTCCATCCCTCAGCGTCACTACTCAAATTCAGGAGGAAGCAGGTGGTACGGCAGCGAAATCAATTGTACACATAAACGACGTCGCATTCGAGGTGGCTGTGGGCCCCTTCAACGTGCGGGAGGCTTTTGGTGATGACGCGGTTCTGGTCCACGCGGCAACAGGACACCCCGTCCTCACGAACGAGTGGGGCGTCACTCTCCAGTCACTCAGTCACGGCGCATTTTATTATCTGATTTAG 1266 0.4724 MASSNRHWPSMFKSKPCNPQHPWQHDMNSSLISSSSCHRTPYTSSSSSSSTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRNLQNSNKITVNNDNNHHVITHESTPPPPSIIIPQISSPNSSSSDNKSSPPPPYSKEIISTIIPPFKSSSSFSIGFSSDVIPSSPSNHHHHATYFQTHNNETSLSEPFFFPVLHHNDTTTVTTTDHHQGFCFSELSGLVQAHQPHYQNVGPCTSLLLSEMMNQKKEQDQKEVMKNNVMNHHHHQHHHPSFCVAASSSVTPTIHSTVVPSMAPATTTTVIVPSLSVTTQIQEEAGGTAAKSIVHINDVAFEVAVGPFNVREAFGDDAVLVHAATGHPVLTNEWGVTLQSLSHGAFYYLI 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2885 421 CDD homeodomain 60 122 IPR001356 GO:0003677
Prci11g2885 421 Gene3D - 61 127 - -
Prci11g2885 421 MobiDBLite consensus disorder prediction 158 178 - -
Prci11g2885 421 MobiDBLite consensus disorder prediction 1 68 - -
Prci11g2885 421 FunFam WUSCHEL-related homeobox 11 61 128 - -
Prci11g2885 421 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 421 IPR044557 GO:0003700|GO:0050793
Prci11g2885 421 Pfam Homeodomain 61 121 IPR001356 GO:0003677
Prci11g2885 421 MobiDBLite consensus disorder prediction 21 55 - -
Prci11g2885 421 MobiDBLite consensus disorder prediction 145 180 - -
Prci11g2885 421 SMART HOX_1 59 126 IPR001356 GO:0003677
Prci11g2885 421 ProSiteProfiles 'Homeobox' domain profile. 57 122 IPR001356 GO:0003677
Prci11g2885 421 SUPERFAMILY Homeodomain-like 57 124 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2885 Prci-Chr11 45415118 45417938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2885 1 131 Wox Gene Family AT2G33880 78.030 4.40e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Prci11g2885 Homeodomain 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2885 - - pcin:129284997 721.465