Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2871 ATGCAAATTCTACCTGGTGTTTGGATGAACTTCATGAGATTATTAAATGTAAAAACAGTCTGGGCCGACAAGTATTTCCCATTTTTTATAGTGTTGATCCATCTGATGTCAGATATCAAAAGGCAAGTTATGGTAAAGCTTCAGCCAAACATGAAGAGAGATTCAAAGAAAGCGAAGACAACGTTCAGAGATGGAGAGATGCTTTGTTGCAAGTTAGCAACTTGTCAGGGTGGGATACCAGGGGCCGGAGGTCTTCCTTTGGCACTTCATGTTTTAGGTACTTTTTTGCGTGGAAGAAGTATGCCTGAGTGGAAAGATGCCTTAGACAAGCTAAAGAAAATTCCAGATGATAATATTCTTCAGATACTCAAAATCAGCTATGATGGATTAAATGATGAAGAAAAGACCATATTTTTGGATATTGCTTGCTTCTTCAGAGAACAGAGGAAAGAAGAAGTAATCCAAATTTTGAAAAATTGTGATCTTTTTCCAACAATTGAGATAAATATTTTGATGGAGAAAGCTTTACTAGTTGAAAAGAAGGATTCGTGTGGAGAGTGTATATTAGAAATGCATGATTTACTTCAAGAATTGGGAAGGAACATAGTTTTTCAAGAATCTCCTAGTAATGTTGGGAGACGAAGTAGGTTGTGGAAATTAGAGGACATTCATGAAATTTTGAAAAATAATACGGGATCTGAAGCAATGCAAGCAATTGTTATGCGCCCAAACCTACATGAATTAGAAGTAAATCCTAAATCCTTTTCTAAGATGACTAATCTTAAATTACTCATCTTACCGTGGGAGGTGAAACTTTCGTATGATCTCAAATGTTTTCCTCGTGCAATAAAAGTTGTTCAATGGTATTCATTTCCTTTAGAAGCTCTTCCACTTCAAATTCCATTGGATAAACTTGTCGATATTAACATGCATCGTAGCAAAATAAAGCAACTACGGAATGGCTTACTGTTTATGCAAAATTTGAAGTTCATTGATATGAGAGGTTCTGAAGATTTGGTTGAAACTCCGGATTTCTCAGGAGTCCCAAATTTAGAAAAATTGATTTTGGATGGATGCTCATCCTTGGTTGCCGTTCATCCTTCACTTGGAGAACTGAAAAAGGTTGTTGAAGTGAGTTTACGTTGGTGCACAAGTCTTGAAATCCTTCCAAGAAAATTGGAAATGAATTCTTTGATGAAGTTAAGTCTTTTCTTTTGCTGTAGAGTTTTTATGCTCCCCGAGTTTGTAGAAAATATGAAAAAATTATCATCCCTTAATTTAAGTCATACTGCTATAACCAATCTTCCTGAATCACTTGGATTCTTGATTGGTCTAAGAGATCTGAATTTGAGTGGATGCAATATTGCTGGTTGCTCAAAAGGATTTAAGCTGCCAAAAAATCTGAATGATCATGAGGCTTTGAGAGAACATGACATCTGTGAAGCTTGGAGTAACAAGAGGGAACTCAATGTGTCAACTTGGAGTAATTTACATCACATTTTTGAAGTTAATCTAACATCATTATCAGAGTTAGACTTGAGCTACTGTTGCATTAGTGATGACTCACTTCCAGATGATTTTGGCGGTTTACCATCATTAATTGCATTAGATTTGGGATATAATGATTTCGTTAATATGCCATCTGGTTGCTTCTCTAAACTTTTTCATCTGCACTATCTGTTTTTTTTAATTGCAAAAGGCTCAAGTCACTGCCAAATCTTCCACCACGGTTAA 1734 0.3581 MQILPGVWMNFMRLLNVKTVWADKYFPFFIVLIHLMSDIKRQVMVKLQPNMKRDSKKAKTTFRDGEMLCCKLATCQGGIPGAGGLPLALHVLGTFLRGRSMPEWKDALDKLKKIPDDNILQILKISYDGLNDEEKTIFLDIACFFREQRKEEVIQILKNCDLFPTIEINILMEKALLVEKKDSCGECILEMHDLLQELGRNIVFQESPSNVGRRSRLWKLEDIHEILKNNTGSEAMQAIVMRPNLHELEVNPKSFSKMTNLKLLILPWEVKLSYDLKCFPRAIKVVQWYSFPLEALPLQIPLDKLVDINMHRSKIKQLRNGLLFMQNLKFIDMRGSEDLVETPDFSGVPNLEKLILDGCSSLVAVHPSLGELKKVVEVSLRWCTSLEILPRKLEMNSLMKLSLFFCCRVFMLPEFVENMKKLSSLNLSHTAITNLPESLGFLIGLRDLNLSGCNIAGCSKGFKLPKNLNDHEALREHDICEAWSNKRELNVSTWSNLHHIFEVNLTSLSELDLSYCCISDDSLPDDFGGLPSLIALDLGYNDFVNMPSGCFSKLFHLHYLFFLIAKGSSHCQIFHHG 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2871 577 ProSitePatterns Zinc finger C2H2 type domain signature. 453 477 IPR013087 -
Prci11g2871 577 SMART LRR_typ_2 505 529 IPR003591 -
Prci11g2871 577 SMART LRR_typ_2 419 442 IPR003591 -
Prci11g2871 577 SMART LRR_typ_2 530 553 IPR003591 -
Prci11g2871 577 Gene3D Ribonuclease Inhibitor 418 573 IPR032675 -
Prci11g2871 577 SUPERFAMILY L domain-like 191 562 - -
Prci11g2871 577 SUPERFAMILY "Winged helix" DNA-binding domain 118 228 IPR036390 -
Prci11g2871 577 Gene3D - 81 131 IPR042197 -
Prci11g2871 577 Gene3D Ribonuclease Inhibitor 200 417 IPR032675 -
Prci11g2871 577 PRINTS Disease resistance protein signature 82 96 - -
Prci11g2871 577 PRINTS Disease resistance protein signature 503 519 - -
Prci11g2871 577 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 82 429 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2871 Prci-Chr11 45235389 45239287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2871 82 569 WRKY Transcription Factor Family AT4G12020 28.827 2.36e-42 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2871 - - pcin:129285347 1161.75