Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2852 ATGCGGAGGCGACCCTCCGCGGCCAGCTTCTTAGAGGGACTATGGCCGTTCAGGCTAAGGAAGTTTGAGGCAATAACAGTTGGAAGCAAAAGCGCCACTCTAGAGCCTCTGGAATTCAATTTGGCAACCATTGAAGCTGCAAAAAATAAGTTTTCACACGAAAACAAGTTAGGACATGGTGGATTTGGAGAAGTTTACAAGGGTATTCTTCCAAATGACAAAGAAGTAGCTGTAAAGAAACTTTCAAAAGATTCTAGCCAAGGTACAAAAGAATTTAAGAATGAGGTTCTATTAATAGCCAGACTTCAGCACAAAAATTTGGTGGCGTTGTTAGGATTCTGCATAGAAGAGCAGGAGAAAATGCTTATATATGAATACGTTCCCAATAAAAGCCTTGATTACTTTCTATTTGGTTCTCCTAGAAGCAAAGTATTAAATTGGTTGGAGCGCTATAAAATCATAGGAGGAGTTACTTGAGGGATTCTCTATCCTCATGAATATTCTTGCTTTAAAATTATACATTGTGATCTCAAACCTAGCAATATTTTGCTAGATAATGAAATGAATGCAAAAATTTCAGACTTTAACTTGGCTAGAATGGTTGCTATCAATGAAAATGAGGAAACTATAAGTAAAATTGTTGGAACATATGGTTATATGTCTCCGGAATATGTAATGTTTGGACAATTCTCTGAAAAATCAAATGTTTTTAGTTTTGGAGTTGTAGTTTTAGAAATCATCAGTGGAAAGAAAAATACAAGTTGTCATGATCAATCACAATATGCGGACGGCCTCTTAAGCTATGCTTGGAATCAATGGAGAGGTGAAAAATTGTTGGGGATATTTGATTCAAATCTAAAAGAATTTGGATCATATGATGAAGTGATAAAGTGCATTCAGATTGGTTTGTTATGTGTTCAAGCAAATCCAGATATTAGGCCTTCCATGGCTATACTTGTTCATTATCTTAGCAATGATTCAATTCAATTGCCACTTCCACAGGAACCTGCATTCGTTCAGCATGGTCCGATGGAGCTTACTGTTGGAAGTAATGAAACATATTGCTCAATGATGCATCTATAA 1083 0.3638 MRRRPSAASFLEGLWPFRLRKFEAITVGSKSATLEPLEFNLATIEAAKNKFSHENKLGHGGFGEVYKGILPNDKEVAVKKLSKDSSQGTKEFKNEVLLIARLQHKNLVALLGFCIEEQEKMLIYEYVPNKSLDYFLFGSPRSKVLNWLERYKIIGGVTXGILYPHEYSCFKIIHCDLKPSNILLDNEMNAKISDFNLARMVAINENEETISKIVGTYGYMSPEYVMFGQFSEKSNVFSFGVVVLEIISGKKNTSCHDQSQYADGLLSYAWNQWRGEKLLGIFDSNLKEFGSYDEVIKCIQIGLLCVQANPDIRPSMAILVHYLSNDSIQLPLPQEPAFVQHGPMELTVGSNETYCSMMHL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2852 360 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 20 126 - -
Prci11g2852 360 SUPERFAMILY Protein kinase-like (PK-like) 35 344 IPR011009 -
Prci11g2852 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Prci11g2852 360 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 127 331 - -
Prci11g2852 360 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Prci11g2852 360 SMART serkin_6 51 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g2852 360 Pfam Protein kinase domain 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g2852 360 ProSiteProfiles Protein kinase domain profile. 51 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g2852 360 CDD STKc_IRAK 57 323 - -
Prci11g2852 360 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 346 - -
Prci11g2852 360 Gene3D Transferase(Phosphotransferase) domain 1 127 330 - -
Prci11g2852 360 Gene3D Phosphorylase Kinase; domain 1 18 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2852 Prci-Chr11 44583458 44598393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2852 35 338 Receptor kinase-like Gene Family AT4G11480 53.947 3.44e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Prci11g2852 Pkinase 2.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2852 - - pcin:129286093 491.115