Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2759 ATGAGGTCTGTGGGGCAAGAAGGGAACTTGATATCAGTTTCACCTGCAATAGGAAACTTTGAAGTGAAATCACCATCTAATTTTCCTTTTGTGGAAGGGAATGCAGCCATCACTAAAGTTTCTGTTCCTTCATATCATGCACCTACAATTAGAAAAAAAGATATTCAACTGGAACGTAGACTTTCAAGTAGTCCGGAGTCAAGAAAAAATCTGGATTTGGAAGATGACATAACTCAAGGATTAGAAGCAGATATTGAAAATGCTGGATCCCTTTTAAAGCGGAAAACATTTGGAGAATATAGTGAACCAAGTTGCAATTACACTTCATATTTACATGGTGCTAATAATGATATAAGTTGTGGGACGTCCAAGTCATTTACAGATTTTGGAAAAGATGGGACTATTGACCTGCAGAGCGATTGCTTTGTTGAGAAGGCTAGTGGTGATCGAAATCATGTAAAGCATCTTAGGAAGTTGAACATGCAATCAGGGGATGCTATGAACGCAATGACATCAAGGTTTTCCAGGCATCCTTCTCCTGACTTGAGGACCAGAGATCTGTCTCCCTGTGCTGAGATTAAACTTGGAAACAAGCGTCATGCAATCCAATGTGCTTTTTTTGCCAAAGGTTGGTGCATCAGGGGTGATTCATGTAGCTTTCTTCATATAAAAGATCCTGTAAATAAATCAGGCCAGCAGATTGAAGGAGAATTGGTTGCTCAAAATTGGAAGAGAGAAGTGCAACCAGAGGAAGATATTGGAGATGATTTTAAGAGATCACTGATGCCTTGTACTCAAGTTCCGTTGCCTGCTACACAAGAAAGAACATCTCTGTATTCATCTGAATTTTACTCAAATGCAATCATCCAGAAAGTGTGCCCAAGCTGGGATCTAGATAAAAGTTGGCCTGTCTCTTCTTTCCCTTCCTACCCAGCCCATACAGAGGGAATGACTGCCACCCGGGGACTAGATATGCATTACGGATATACATCCGTAGTTGAGAGTCATTCACCTAATTTAAAATTCTCTTCATATGAATGGGAGCCATCTGTTCATTTTGAACCTTCTGTTTCTTCTGGTATGTGGTCAGTAGAAGATCAAAAAGACCCTTTTCATGGTAGTTTAGAGATACTCAATATAGGGGATGAATCCTTGAAAGCTTTCAATTTATCTCAAAGGTCATCCATTCAGAGTTCATATCAGGTGCCAAAAAATGGTGACTCCGCTGAAGCTGCAAGTCAGATAGAAATGGCTCTGAGAAATTTTCGCTTTGCACTTGCTGATCATGTGAAAAAGATTCTAAGACCACTTTGGCATGAGGGTCATCTCAGCAAGGATGCGCATATCGTGATTGTTAAAAAATCAGTTGACAAGATTGTTGGCTCCTTACAGCCTCAGCAAATTCCTCCAAATGAGGATTCTGTCAAGAAGTACATTTCTTTTTGTCATGTGAAAGTAGTAAATCTGGTCAAAGAATATACCGGTATATATGGCAAGGTTTGA 1503 0.3985 MRSVGQEGNLISVSPAIGNFEVKSPSNFPFVEGNAAITKVSVPSYHAPTIRKKDIQLERRLSSSPESRKNLDLEDDITQGLEADIENAGSLLKRKTFGEYSEPSCNYTSYLHGANNDISCGTSKSFTDFGKDGTIDLQSDCFVEKASGDRNHVKHLRKLNMQSGDAMNAMTSRFSRHPSPDLRTRDLSPCAEIKLGNKRHAIQCAFFAKGWCIRGDSCSFLHIKDPVNKSGQQIEGELVAQNWKREVQPEEDIGDDFKRSLMPCTQVPLPATQERTSLYSSEFYSNAIIQKVCPSWDLDKSWPVSSFPSYPAHTEGMTATRGLDMHYGYTSVVESHSPNLKFSSYEWEPSVHFEPSVSSGMWSVEDQKDPFHGSLEILNIGDESLKAFNLSQRSSIQSSYQVPKNGDSAEAASQIEMALRNFRFALADHVKKILRPLWHEGHLSKDAHIVIVKKSVDKIVGSLQPQQIPPNEDSVKKYISFCHVKVVNLVKEYTGIYGKV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2759 500 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 157 237 - -
Prci11g2759 500 SUPERFAMILY CCCH zinc finger 198 222 IPR036855 GO:0046872
Prci11g2759 500 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 204 222 IPR000571 GO:0046872
Prci11g2759 500 ProSiteProfiles Zinc finger C3H1-type profile. 198 225 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2759 Prci-Chr11 43230378 43236033 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci11g2759 zf-CCCH 3.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2759 - - pcin:129285431 846.269