Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2740 ATGGCTTCTTCTTCTCATCATCAAAGGGTTATGGAAAAGCCAAACCAAGAGCTTCTTCAACAGCAACAAGAAGCTCTCAAGTGTCCTCGATGTGACTCATCAAACACCAAGTTCTGTTACTACAACAATTACAGTTTGTCTCAGCCCAGACACTTCTGTAAAGCCTGCAAACGATACTGGACTCGAGGAGGTACGTTGAGGAATGTTCCTGTAGGTGGAGGTTGCAGGAAAAACAAACGTGTGAAGCATCGTCCTTCTTCTTCATCATCATCAGCTTCAGATCAAACTCATAACGCTATTATTGCACCTTCTAATTCTTCTTCTTTCGCTGCCAGTACTACCGTCTCAGCTGCTTCAAACCCTCCTTCACAATCTCAGATCGATGTCGCTCCTTTACTTTATGGCTTGAATCTTCCGTTTCCAAGGTTCAATTCCAGTTCTGGGTTTGATCACCATCTTCAACCAGCTCAGATCAGTAATTCCATTGGGTTGGATTTCACTGAACATCATAATGGTTACCGAAATGGGTTTTCTTCAAATCCTAATCTTCTTTCAAGCTATAGCTCCTCCATCTTTGGAAATGCTTCTTCTTCGACATCTACAACCACACCCAGCATCATGGCTTCGCTGCTAAACTCTCCGAATCTGCAGCAACAAAAGTTCATCAATGGTGATTCTAACAGTACTTTTCAGGGGTTCGTCGCACCAGTACTAGAAGAGCTGGCAATAGCAGGCAATAATAATAACAACAATAATAGCACGAGTACTGAGGCATCAGAGATGCTTGCTTTAAAAGAAGTGAAATCTGTGGTGGAAGATGATAACAGGTTTCTGAGTTGCTGGCAAAGTAATAATAACCAGATCGAGCATCAAGCAGGCTTGTCCGATCCTTCTTCACTTTATTGGAACGCAGCAACAGCTATGGTGGGTACTACTACTTGGAATAATGATCAAACCAATATTGGTCCTCAGTCTCTTCTCTCATCTGATCTACAATGA 999 0.4244 MASSSHHQRVMEKPNQELLQQQQEALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKHRPSSSSSSASDQTHNAIIAPSNSSSFAASTTVSAASNPPSQSQIDVAPLLYGLNLPFPRFNSSSGFDHHLQPAQISNSIGLDFTEHHNGYRNGFSSNPNLLSSYSSSIFGNASSSTSTTTPSIMASLLNSPNLQQQKFINGDSNSTFQGFVAPVLEELAIAGNNNNNNNSTSTEASEMLALKEVKSVVEDDNRFLSCWQSNNNQIEHQAGLSDPSSLYWNAATAMVGTTTWNNDQTNIGPQSLLSSDLQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2740 332 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Prci11g2740 332 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 219 IPR045174 GO:0003700|GO:0006355
Prci11g2740 332 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Prci11g2740 332 MobiDBLite consensus disorder prediction 71 96 - -
Prci11g2740 332 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2740 Prci-Chr11 42826839 42828639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2740 26 85 C2C2-Dof Transcription Factor Family AT1G28310 95.000 2.10e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Prci11g2740 zf-Dof 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2740 - - pcin:129285070 596.66