Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2736 ATGAGTACTTATTCTATTGGAGAGAATGCTCCAACAAGTCACCGACGAAGAGATCTGGATTTGGATCTGAATAGGGCTCCACTTGAGGTGAATATGGAGCAGGAGGGACCTCAAGTAGAAAATCGTCAAGTTGTTCAACAGTCACAGTTTTTTCAACCTATTGATGTGGATGCTATTATTGATGATGACGTTATTGAATCTACGCAAAGTGATTTTCTTGAGGCCAAAAATAATTCAAGAAGAAATCGTGGGAGGACTATAGTCGATGTGGATTTAGACAATGTAAGTCGGGTAGCTGAAATTACTCCCAACAATCACAGAGAATCTTTTTGGAACCAAACATTTCCTAATTGTGACCCATATATTAAATTGGATGGCATTGTTAGTTCTGAGCTGGGGAAAGAGATCAGAAATTCACCTGAACCAACAAAGATGCCTGTCTTTAACTGTCCAATATGTATGGAACCATTTGTTGAAGAAGTGTCAACAAGGTGTGGTCACATATTTTGCAAGAGATGCATCAAGGCTGCTTTAAAAGCAAAACGTGAATGCCCTACTTGTAGGGTCAAGGTTACTTCGAAAGGGCTTATAAGGGTGTTTCTACCATCACCTGGTTCTCCATAA 624 0.3974 MSTYSIGENAPTSHRRRDLDLDLNRAPLEVNMEQEGPQVENRQVVQQSQFFQPIDVDAIIDDDVIESTQSDFLEAKNNSRRNRGRTIVDVDLDNVSRVAEITPNNHRESFWNQTFPNCDPYIKLDGIVSSELGKEIRNSPEPTKMPVFNCPICMEPFVEEVSTRCGHIFCKRCIKAALKAKRECPTCRVKVTSKGLIRVFLPSPGSP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2736 207 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Prci11g2736 207 SMART ring_2 150 187 IPR001841 -
Prci11g2736 207 ProSitePatterns Zinc finger RING-type signature. 165 174 IPR017907 -
Prci11g2736 207 PANTHER ELFLESS, ISOFORM B 10 203 - -
Prci11g2736 207 Pfam Zinc finger, C3HC4 type (RING finger) 149 187 - -
Prci11g2736 207 SUPERFAMILY RING/U-box 149 194 - -
Prci11g2736 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 202 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2736 Prci-Chr11 42718542 42721178 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2736 11 203 C3H Transcription Factor Family AT5G48655 42.929 3.22e-38 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2736 K22651 - gmx:100792853 182.57