Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2642 ATGGATCCTGATATATGTCGCTGGATACTAGAGTTTTTGCTTAGGAGTTCCATCCCTGATTCAATTGTCAAGAAAATCATGAAGGCTTTGCCTCTCTCTAATATCAATTCGCGGCTAAGGAAAACAATCGTTCTTAGGGATATGCAATCTGAGGTGGCTACAACTTCTCTTACAGAAAACTTATTAGTTTGTCTAGAGGTTATTGAAGAAATAAATAGGCTTGATGGCATTGCAATCTCAGCAGCGATGAAGGAGGCATATTGTGCTGTTGCTGTGGAGTGCACCGTCAAGTACCTTGATGCTTGCCCAGATAAGAACACTTGCGGCTTGTTTGATGATGCTGTCAATAGGATTTGGAGGGGCCGAGTTCGGCAGATGATGGAGGCTGTGGCATCAGGGAAAAAGATTGACTTGTTTACAGCTGAGTTGATCGGGTGGAAGGATGTTATAGAGTCTGCACGTTGGGATAGAGAGGTGTGCGAGAGGTTAACAAACATGAATACCAGACAAAATGCATTCAATAAGGTTAGGGTTTATCTAAAAGAAACCTGGGCATCCATGGGCCCTGCTTTTCTAGAGCAAGCAGCTATATTGTCTGAAGACAAGGGCTGGGGAAATTCATGGGGGGATAAGATGGGTGACATACGAGGAGAGCTTGCTGATTGTATACCCAATGGAGGTTGTGACAATGGTGTTTCTGAATCTGTTTTGGTCTCTGATCAAATGAATAGGTGTAAAGGAAGGTTACATTATTCAACAAACATGACGGAGAAGGGTTTAGTTGTGTTTGATGGCAATGCATTGTACACTGCTGCAACTTGCATGGAGAAGACACTGGTGGCAGGTGGAAACCAGGTTTTTGAGCAATTGGGTAAGAGAGCTGTGTCTTCTGTTGGCGGAAGTCAGGCTTTGGGAGGGATTGACTTGCCTCGGAGGATAAATAAAGAAATTGAAAAGGTCAAGCTGCCACTTGAACATAATCATGGTGCACCCCGTATACGGAGAGGAGTTAATATTAGTGATGCTGAGGAAGCAAAGTCATCGACTGTGTGCAGCAAAGATCACAATGCATCTAATATTCAAGTTGACAAACTTCGGAAATCTCTCATATCAAGTTCTTTGGAGTTGCGAGCATTGGTGAAGGATCCTCTTCCTGATGCATTACATAGATCTGATATTGTAAGATCTGAATTAGCATCAAAAGGTGTGAATCATGAGCCTTCTTTTGAAAACCAGAGTGCAGTTGTTGATGTACCAGAACAAAATACTTGTAGGAGCATGGTTCTTTATCAACCTATTGATATTTTAAAGAAACAATATTCTGCTAATTGTAGTAATGTTCAGCGTCCCAGTTTGATGGAAAGAAACAGTACTGCTTGTACTTATGAGTGGGATGATTCATTTATTGACGTTCCTGGGAGAAGCCCTAAGAAAAGGAGGAGAAAGGGAAGATGGGGTTCTGAAGAGGAGGATGCGTTAAGGGCTGGTGTAAAGAAGTTTGGCAAAGGAAATTGGAAGTCAATCCTAAGATTTTATAGTGAGATATTTACAAAGACAGGAAGAACTGAAGTTGATTTGAAGGATAAATGGAGAAATTTGACACGATAG 1608 0.4173 MDPDICRWILEFLLRSSIPDSIVKKIMKALPLSNINSRLRKTIVLRDMQSEVATTSLTENLLVCLEVIEEINRLDGIAISAAMKEAYCAVAVECTVKYLDACPDKNTCGLFDDAVNRIWRGRVRQMMEAVASGKKIDLFTAELIGWKDVIESARWDREVCERLTNMNTRQNAFNKVRVYLKETWASMGPAFLEQAAILSEDKGWGNSWGDKMGDIRGELADCIPNGGCDNGVSESVLVSDQMNRCKGRLHYSTNMTEKGLVVFDGNALYTAATCMEKTLVAGGNQVFEQLGKRAVSSVGGSQALGGIDLPRRINKEIEKVKLPLEHNHGAPRIRRGVNISDAEEAKSSTVCSKDHNASNIQVDKLRKSLISSSLELRALVKDPLPDALHRSDIVRSELASKGVNHEPSFENQSAVVDVPEQNTCRSMVLYQPIDILKKQYSANCSNVQRPSLMERNSTACTYEWDDSFIDVPGRSPKKRRRKGRWGSEEEDALRAGVKKFGKGNWKSILRFYSEIFTKTGRTEVDLKDKWRNLTR 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2642 535 CDD SANT_TRF 484 535 - -
Prci11g2642 535 SUPERFAMILY Homeodomain-like 479 534 IPR009057 -
Prci11g2642 535 Pfam Myb-like DNA-binding domain 482 533 IPR001005 -
Prci11g2642 535 SMART sant 481 535 IPR001005 -
Prci11g2642 535 Gene3D - 474 535 - -
Prci11g2642 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 477 535 IPR017930 -
Prci11g2642 535 ProSiteProfiles Myb-like domain profile. 477 534 IPR001005 -
Prci11g2642 535 PANTHER MYB TRANSCRIPTION FACTOR 1 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2642 Prci-Chr11 38729286 38733747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2642 485 533 Single Myb Histone (SMH) Gene Family AT1G15720 59.184 3.99e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci11g2642 Myb_DNA-binding 2.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2642 - K11111 pcin:129285243 1056.2