Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2557 ATGGTGGAGGAGGAGGAAGTATTGCCGGACCATCTTCGCTGTAGCCGCACCGACGGCAGACAATGGCGGTGCCGTCGGAGAGTCATGGATAATCTGAAGCTATGTCAGATTCACTATCTACAAGGTCGTCATCGGCAATACAAGGAGAAGGTCCCGGAGTCGCTGAAGCTTCAGAGGAAGCGAAAGAATGGGAATAATGACAGCAAAGATGATTCTGTTAATCTCGACAATGTTGAAATTAGGGCACTGAAAGTGGGGAAGAAGGCGAACCTGATAAAGAAGAGGCGGAAATTCTGGGATTCTTCTGAAGCAGTGAATGCTCATCCTGTGAAGAAAAAGGCCTTGAAGCAAGGTGGTATGCAGTTGGACTTGATAAGGATGGTTCTGAAGAGGGAGATTGAGAAGAGGAAGAAGAAGGAGAAGCAGGGAGAGAAAAGGATGAAGAAGTCGGAAGAAGAAGAGCTGATTAATTACAGCGAGGGAGAGTTGACTAGAGAATTACCCAATGGTGTTATGGCAATCTCTCCAGCATCAACGCCCCGAGATTACAACAATGTCGGTTCACAATGTGATGTTAAAGTAGGGATTGATCATAAAGCAATCACTCCACGTTACTTCAGGTCCAAGAATGTGGAGAGGCTCCCTGCTGGCAAGTTGCAGGTATTGCCTTTTGGGCGAAATTTGAAGAAGTTGAGGAGGAAAAAGTGTCACTGGTGCCAGAAAAGCGAATCTTGGAATCTCATTAAATGTTCTAGCTGTCAAAAAGAATTCTTTTGCATGGACTGCTCCAAAGACCGGTACTTTGAAACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACATGTTCCTGTAAAGAGTGCTTGGCAAGTCGATGTAAAGACAGTGAAAGTAAGGAATACTTGCCGTGTAAAAGCAGAGTTGACAGAATTTTGTGTTTTCATTATATGATCTGCATGCTTCTTCCTGTATTAAAACAAATCAGTGCAGATCATAATATTGAACTAGAAGCAGAAGTGAAAAATAAAGGGAAAAGATCCTCTGGTATTCAAATCAAGCAGGTTGAGTTTGGCTGTAATGAGCAAAATTGCTGGAAACCCACTAAATTGAAAGATCGCATTGCTGATGAAAACCACATTTTGGATGAGGTCGTTTCCAATGGCAATTCAGCAGCTACTTCATCATCACCAGACTGCACAACTTGTAAAGGTTCTGGCAACAGAGCTTGTTCCCCCACAGAGCTTGGTGGTTGTGATGATAGCCTTCTAGATCTGAGATGTGTTTTTCCCATAAGCTTGATGAAAGAGATGGAAACAAAAGCTGAAGAAATAGCTTGCTGCTATGACTTTCCTGAAGCTTTGGATAAAAGTTCAAGCTGCTCACTTTGTCTCAATACTGATAATAAAATTGATAGATACAAACAGTGGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTGCTTGTTTTATCCCACAGTTTTGAACATCAGTCATGATAATTTTGAACACTTTCAGAAGCACTGGGGAAAAGGTCATCCAGTAGTAGTGCGAGATGCTCTCCAAAGTAAATCAAATCACATCTGGGATCCACTGGTCATGTTCTGTGCTTATCTTGAGCAGAGTATTGTAAGATATCAGAATGATAAGGACTTACTTGAATCTTGCTTGGATTGGTGTGAGGTTGAAATCAACATTAGGCAGTTTTTTGCAGGGTCTCTGAGATGTCAACCTCAGAAAAATACTTGGCATGAGATGCTTAAATTGAAGGGTTGGCTGTCTTCCCAACTATTCAAAGAACAGTTTCCGATTCATTTTGCTCAAGTGATTGATGCTCTACCTCTTCCAGAATACATGAATCCCATGTCTGGTATTCTGAATTTAGCCGCAAATTTGCCACAAGGGCAAGCAAGACGTGATATAGGTCCGTTTGTCTATATGTCATATGGTTGTTCTGATGAACAAGCTGATTCTGTAACAAAACTCTGTTATGACTCATATGATGTGGTTAATATCATGATGCATTCAACAGATATCCCTCTCTCTACAGAACAACTCACTAAAATAAGAAAGTTATTGAAAAAGCACAGAAATCTGTGTCAAAGGGAGTCTCCTGAGATTATTACTGAGCAGATAACGGGACAATGTTTGAAAGGAAATTCAGTATTGCATGCCGAAGATGAGGAACAAAATGAAGTGCAGAGTATGGTTAGAGAAGAGATGAATTTCTTCCGGAGAGTCAACAGAACAACTTCCATCTCCATGGAGGCAATAAAAGCAGCAAGTCGGAGTACAGACAGCATTATTTCCCAGGGTGGAGAATGTGATTCAGATTCTGATTCTGATCTCAAATCCACTGCACTTCATGGGACAGTCCAGAACACTCTATGTTCTACACACAATAATCACAGATATTCTGATGATAGCTCAAATAATGATAGGAATAAAAACCTTGATGACCATTCTGGTGCCCAGTGGGATGTATTTCGCAGACAAGATGTCCCAAAACTAATGGAATACCTTAAAAGACATTGTATTGAATTTTCTGATACCCGGAACTATAAAAAGAAGGTCATTCACCCAATTTTAGATCAGATCTTCTTTCTTGACGATACTCACAAAATGAGGCTTAAGGAGGAGTTTGAAATTGAACCGTGGACTTTTGCGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATACCAGATCAGGAATCCAAAGTGTTCTGTTCATGTGATACTTGAATTTGTGTCCCCTGAAAATGTTAACGAGTGTTTTGAGTTGTTTGATGAAGTCTGTCTACGTCCTGAAGGGCATAAAGCGAAAGCAGATAAGCTGGAGATGAAGAAAATGGCCCTTTATAGCATGAGAACAGCGATAAAGGAAATAGGAGATCTTACCTGTAAAAAGTGA 2931 0.4094 MVEEEEVLPDHLRCSRTDGRQWRCRRRVMDNLKLCQIHYLQGRHRQYKEKVPESLKLQRKRKNGNNDSKDDSVNLDNVEIRALKVGKKANLIKKRRKFWDSSEAVNAHPVKKKALKQGGMQLDLIRMVLKREIEKRKKKEKQGEKRMKKSEEEELINYSEGELTRELPNGVMAISPASTPRDYNNVGSQCDVKVGIDHKAITPRYFRSKNVERLPAGKLQVLPFGRNLKKLRRKKCHWCQKSESWNLIKCSSCQKEFFCMDCSKDRYFETQNEVKMACPVCRGTCSCKECLASRCKDSESKEYLPCKSRVDRILCFHYMICMLLPVLKQISADHNIELEAEVKNKGKRSSGIQIKQVEFGCNEQNCWKPTKLKDRIADENHILDEVVSNGNSAATSSSPDCTTCKGSGNRACSPTELGGCDDSLLDLRCVFPISLMKEMETKAEEIACCYDFPEALDKSSSCSLCLNTDNKIDRYKQWQEAALREDSNDNCLFYPTVLNISHDNFEHFQKHWGKGHPVVVRDALQSKSNHIWDPLVMFCAYLEQSIVRYQNDKDLLESCLDWCEVEINIRQFFAGSLRCQPQKNTWHEMLKLKGWLSSQLFKEQFPIHFAQVIDALPLPEYMNPMSGILNLAANLPQGQARRDIGPFVYMSYGCSDEQADSVTKLCYDSYDVVNIMMHSTDIPLSTEQLTKIRKLLKKHRNLCQRESPEIITEQITGQCLKGNSVLHAEDEEQNEVQSMVREEMNFFRRVNRTTSISMEAIKAASRSTDSIISQGGECDSDSDSDLKSTALHGTVQNTLCSTHNNHRYSDDSSNNDRNKNLDDHSGAQWDVFRRQDVPKLMEYLKRHCIEFSDTRNYKKKVIHPILDQIFFLDDTHKMRLKEEFEIEPWTFAQHVGEAVIIPAGCPYQIRNPKCSVHVILEFVSPENVNECFELFDEVCLRPEGHKAKADKLEMKKMALYSMRTAIKEIGDLTCKK 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2557 976 ProSiteProfiles WRC domain profile. 8 54 IPR014977 -
Prci11g2557 976 Coils Coil 133 153 - -
Prci11g2557 976 MobiDBLite consensus disorder prediction 802 824 - -
Prci11g2557 976 Pfam JmjC domain, hydroxylase 825 918 IPR003347 -
Prci11g2557 976 Pfam WRC 9 50 IPR014977 -
Prci11g2557 976 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 388 975 IPR045109 GO:0032454|GO:0033169
Prci11g2557 976 ProSiteProfiles JmjC domain profile. 624 939 IPR003347 -
Prci11g2557 976 MobiDBLite consensus disorder prediction 809 824 - -
Prci11g2557 976 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 140 189 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Prci11g2557 976 SUPERFAMILY Clavaminate synthase-like 495 960 - -
Prci11g2557 976 MobiDBLite consensus disorder prediction 135 154 - -
Prci11g2557 976 SMART cupin_9 605 939 IPR003347 -
Prci11g2557 976 Gene3D Cupin 496 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2557 Prci-Chr11 35653830 35659713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2557 9 48 GRF Transcription Factor Family AT2G22840 47.500 9.54e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Prci11g2557 JmjC 4.9e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2557 K15601 - gmx:100810673 1255.74