Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2484 ATGACGGTGGCGTCGGATTCTTCTCCAGAGTGTTTCAGCCGGATGATGGCTTCGATGCCGGGGTTTCGGTTCCATCCTACCGATGAGGAACTAGTCATGTACTATCTGAAGAGGAAGATGTGTAGGAGGAAGCTGAAGCTCGATGTAATTCGTGAAATTGATGTCTACAAGTGGGATCCTGAGGAATTGCCTGGGCAGTCAGTGCTGAAAACTGGAGATAGGCAATGGTTCTTTTTCAGCCCTAGAGATAGAAAGTATCCTAATAGTGGCAGGACTAATCGAGCAACAAGATATGGATACTGGAAAGCAACAGGAAAAGATCGTAACATTACCTACAATTCTCGGACAGTTGGGGTGAAAAAGACCCTGGTTTTCTATAGAGGTAGAGCACCACATGGTGAGCGAACTGATTGGGTTATGCATGAGTACACATTAGAAGAAGAAGAAGTTGCAAGATGCCAAAATTTTAAGGACTATTATGCCCTTTACAAGGTGTTCAAGAAAAGCGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCGCCATTTATAGAAGAAGAATGGGGAGATGATGACTTTGTAGATGTTAATGTTAATTCAGCTGATGAGGCTCCAATTTCACAAGTTGATGAGGGTCCTTCTGTTCACACTGGGACTTGTAATGGTCAAGCGCAGCCTTTGTTTGATCTTGACCTTGATGAGGTCTTGAAAAGAATGATGGATGAGCTGGTTCCTGACCTGCCTTCACTGTGTCCTGCCTTACCTCAGGTTCCTGCTGAAGATGTGCTCGATCAAATTTCAAAGGAAGTGACAATTGCAGAGCCAATCAAAATGTTTCATTCAAGCGGTCATTGCTATGACCCTACCCAATCAGCTACCGCTCACATGCATGTTTCAGAAGCACCTGAAGTCACTTCTGCTCCCAGCGTTCAGTTAGAGGAGCCTCTCTTTCACGAGGATGACTTCTTGGAAATGAACGATCTCATTGATCCTGAACCAGCATTGCCAGAAATAGAAAATCCTGTGGAGAACATGGAGTTTGAAGATGGATTAAGTGCATTTGACTTGTTCCATGATGCAGAGATGTTTCTTCGTGACATGGGGCATATTGACCAGGAAACTGTTTCACATCCTTATGTGAATACTTTGGAGAGTAATGTTGTGAATCAGCATTATCAATCTCTACCCCTTGGAGGCAATGCGGATCAAAGTTGTGAACTCTGGATGCGTCATGAAAGTCACATCATGAGTCCAACAGAACATGCTAATGTTTCTTTCTCTTCGTCAACCTCAGGTGTGGTTTATGAATCTGCCAGCTTGCCTACTGAAGGTAACCGTAATCAAAGTGGCAGTGTGAGACAAGTTCCTACAAGTAGACTGTCTTCTGCTCTCTGGGCCTTCCTTGAGTCAATACCTACTACTCCTGCATCAGCTGCAGAGAATGCAAATCGGGCTCTTGAGCGGGTGTCTAGCTTTAGTAGGGTGAGAGATAATGTGAAGCAGGCAAGCATGGCTGCTGCCGCTGTTGCTGCAGGTAATGAAAATGCGATCATGAAGAGAGCAGGTAAAGGAAAGGGAATCTTCCTTTTCTTGCCGGTTCTTGTTGCTTTATGTGCCTTTTTATGGGTTTCTATGGGAACTTTGAGACTACTTGGGAGTTCATTCCCTGACATTTGA 1677 0.4454 MTVASDSSPECFSRMMASMPGFRFHPTDEELVMYYLKRKMCRRKLKLDVIREIDVYKWDPEELPGQSVLKTGDRQWFFFSPRDRKYPNSGRTNRATRYGYWKATGKDRNITYNSRTVGVKKTLVFYRGRAPHGERTDWVMHEYTLEEEEVARCQNFKDYYALYKVFKKSGPGPKNGEQYGAPFIEEEWGDDDFVDVNVNSADEAPISQVDEGPSVHTGTCNGQAQPLFDLDLDEVLKRMMDELVPDLPSLCPALPQVPAEDVLDQISKEVTIAEPIKMFHSSGHCYDPTQSATAHMHVSEAPEVTSAPSVQLEEPLFHEDDFLEMNDLIDPEPALPEIENPVENMEFEDGLSAFDLFHDAEMFLRDMGHIDQETVSHPYVNTLESNVVNQHYQSLPLGGNADQSCELWMRHESHIMSPTEHANVSFSSSTSGVVYESASLPTEGNRNQSGSVRQVPTSRLSSALWAFLESIPTTPASAAENANRALERVSSFSRVRDNVKQASMAAAAVAAGNENAIMKRAGKGKGIFLFLPVLVALCAFLWVSMGTLRLLGSSFPDI 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2484 558 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Prci11g2484 558 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Prci11g2484 558 FunFam Nac domain-containing protein 86 27 171 - -
Prci11g2484 558 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 282 - -
Prci11g2484 558 Pfam No apical meristem (NAM) protein 20 145 IPR003441 GO:0003677|GO:0006355
Prci11g2484 558 SUPERFAMILY NAC domain 15 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2484 Prci-Chr11 29915395 29919458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2484 5 555 NAC Transcription Factor Family AT1G34190 44.576 1.74e-144 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci11g2484 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2484 - - gmx:100794925 632.098