Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2459 ATGAAAAAATCTCCTTCCTTTGTTTTCCTGATCTTCTCACTCCATTGCTTCATATCCTCCTTAGCCTGGATTGATGCAAACATCACTACTGATAAATCTGCACTTCCTAGCCTCAAATCTTTAATCACTTCAGATCCATATGATTCTTTATCTACTTGGTCTCTCTCTTCTTCTCCATGCAATTGGGTTGGTGTCACCTGCAATACTCACCATGGAAGGGTTCGTTCCTTGAACCTTGGTGGTATGGATCTTAAAGGTACCATATCTCCACAATTGGGGAATATCTCATTTCTTGTTGAACTTGATCTTAGTAGCAACAGTTTTTATGGTCAAATACCAAGAGAGTTAGTTCAATTGCATAGATTGAAACTATTGAACTTGAGCTACAATGACTTTCATGGACAAGTTCCAGCATGGATAGGAGATTTATCCATATTGGAGTACTTAAATATTGGAAATAATAGTTTTGATGGATCAATTCCTGTTGAGCTAGGAAGACTCAAGCGTTTGAAGATTTTACGACTTGCAGTTAAAAAGCTTTCAGGAATTATTCCCCAAACAATTTCTAACTTATCTTCACTTGAACTGCTAAGTCTGTCTCATAACACTTTGTCAGGAGACATTCCCGATGAAATTGGTGATCTTTCACAACTAAAGATGTTGTATCTTGAAGTGAATCAACTTGCTGGTTCTATACCATCTTCATTGTTTAACAATTCAAAGCTACAAGAGATTGAACTTTCAATGAATCAATTATCAGGGAGTCTTCCAACAAATGTGTGTCTTGAGCTTCCAAAGCTTGAACTATTTTTTGTGGTTGAAAATGATTTGTCTGGCGAAATACCTTCCATTTGGCATCAATGCAAAGAATTAGCGCAATTAGAATTAAGTTATAACATGTTCAACCCAGGAATCATTCCAAGTGACATTGAAAATTTGACCAACCTCCAAGCATTATCTCTTTCCGACATCAACTTGCAAGGTGAAATTCCATTGTCTCTCTTCAACGTTTCTTCTCTAAGAATTGTGGGTTTAGCAATAAACAATTTGAATGGTAATCTTCCAATACTAACCAGCAATGAAACGTTGCTAGAAATATTACATCTACAGGTCAACTCCTTCACAGGTAGAATTCCTTCATTTATTTGGAACATGTCTTCATTGAAAAAGGTCAGCCTTAGTTGGAATCATTTAAATGGTAATTTGCCTGAGGAATTGTGCCATCAACTCCCTTTACTTGAAGCCTTCGATGTTGCTGGTAATCAATTAGAGGGAAGCATTCCAAAATCAATAAGTAATTGCATATCTTTAAAGGAATTGTATTTGGGTCATAACTCTTTTGCAGGTTTTGTACCTAGAGGCATTGGTGAACTTGAGAACCTCAATCTCTTAGACTTGAGCCAAAATCATTTGAAAGGAGCAATTCCTTCCAATATATTCAACATTTCAACGTTGACACGTTTGAACCTTGGTGGTAATTTCCTCTCTGGCACTCTCCCATCATATTTAGGAATTGGCATTCCCAACTTGAGGGAATTATTACTGGAAGATAATGAACTTATTGGACAAATTCCAAGTAACATATCAAATGCTTCTAAGCTCATTAAGTTGGATTTGTCATTGAATAAATTTAGCGGAGCTATACCCAATGTACTTGGACATTTAACAAACTTGATGAAATTAGATTTGCATGGGAATGATTCGAGTGGGTTAATTCCTGATACAGTTAACAAATTACATGGTCTTCAACATTTAAGCCTCGGTAGCAATAGATTGTATGGGTCCATCATAAATGAACTTTGCCAACTCAAAAGTCTAAGTGAGTTGTATCTTGCCAACAACATGTTTTATGGAGTGGTTCCAGGGTGCCTTGGGAATACTTCTCTACGGAAGTTGGATTTGAGCTCTAACAAATTGATTTCTCATATACCCTCTTCTCTTTGGAGTCTCAAAGATATCTTGGTCTTAGACATATCCTCCAATGCATTGAGTGGAATAATTTCACCAAAGGTATCAAACTTTAGAACAATTATACTATTGAACTTGTCAAGAAATCAAATTTCAGGAGGCATCCCTACAACCATGGGTAGCCTACAAACTTTGCAAACCCTATCTTTGGCCCAAAACAAATTACAAGGGAATATTTCTGAATCGCTTGGTAGCATGATAAGTATGAAATCTTTGGATCTTTCCTATAATTATTTGTCTGGTGTGATTCCAAAATCCTTAGAGTTGTTAATCTATCTTCAACACATTAATGTTTCTTATAATTTATTGCATGGAGAAATTCCAAGTGGGGGCCCTTTTCAAAATTTCACTTCTGAATCTTTTATAATGAATAATGATCTTTGTGGGAAGTCACAATTACAAGTTCACCCATGTAGGAAAGAACACAAGCACATGTCAAATAAATTGAAGCTAGTGATAAAGTGCTCATTGCCTATCATATGCATGGTTGTCATTTTGGTTCTTTCAGGCATTGTCTTTCTAAAGTGTAAGAAAGATCATATTAAGGATTCAACCAATGGGGATTTAATAAATTTTGAGACATCAACTAGGATATCCTATTATGAGCTTTGGCAAGGAACAAATGGATTTGATGAGAGTAATCTTTTGGGCTCTGGAAGTTTTGGATTAGTATACAAACCAACTCTTTCAACCTCAAAAATAGTTGCTGTCAAAGTATTTAAGTTAGAAATGGACGAAGCATTAAGAAGCTTTGATATTGAATGTGCTACCATGTGCAATTTACGCCATCGCAATTTCATCAAGGTCATCAGTTGTTGCTCAAATGATCATTTCAAATCTCTAATAATGGAATTCATGGAAAATGGGAGTCTAGACAAATGGTTATACTCTCATAACTATTATTTAAATGTCTTGCAAAGGTTGAACATAATGATTGATGTGGCAGTTGCTTTAGAGTATCTTCATCATGGTTCTTCAACACTAGTTGTTCATTGTGATGTGAAACCAAACAATGTTTTATTGGATGAAGATATGGTAGCTCATCTTAGTGACTTTGGTATTGCTAAATTGTTTGGTGAAGGACAACTAGAAATTTATACCAAAACTTTGGCTACAATTGGCTATATGGCACCAGAGTATGGATCAAAAGGAGTTGTTTCTATCAAAGGAGACGTCTATAGTTATGGTATTTTGCTAATGGAAATCTTTACAAGGAAGAAGCCGACAGATGAGATGTTTGTTCAAGGATTAAGTTTGAAAGATTGGCATCATTGA 3243 0.3565 MKKSPSFVFLIFSLHCFISSLAWIDANITTDKSALPSLKSLITSDPYDSLSTWSLSSSPCNWVGVTCNTHHGRVRSLNLGGMDLKGTISPQLGNISFLVELDLSSNSFYGQIPRELVQLHRLKLLNLSYNDFHGQVPAWIGDLSILEYLNIGNNSFDGSIPVELGRLKRLKILRLAVKKLSGIIPQTISNLSSLELLSLSHNTLSGDIPDEIGDLSQLKMLYLEVNQLAGSIPSSLFNNSKLQEIELSMNQLSGSLPTNVCLELPKLELFFVVENDLSGEIPSIWHQCKELAQLELSYNMFNPGIIPSDIENLTNLQALSLSDINLQGEIPLSLFNVSSLRIVGLAINNLNGNLPILTSNETLLEILHLQVNSFTGRIPSFIWNMSSLKKVSLSWNHLNGNLPEELCHQLPLLEAFDVAGNQLEGSIPKSISNCISLKELYLGHNSFAGFVPRGIGELENLNLLDLSQNHLKGAIPSNIFNISTLTRLNLGGNFLSGTLPSYLGIGIPNLRELLLEDNELIGQIPSNISNASKLIKLDLSLNKFSGAIPNVLGHLTNLMKLDLHGNDSSGLIPDTVNKLHGLQHLSLGSNRLYGSIINELCQLKSLSELYLANNMFYGVVPGCLGNTSLRKLDLSSNKLISHIPSSLWSLKDILVLDISSNALSGIISPKVSNFRTIILLNLSRNQISGGIPTTMGSLQTLQTLSLAQNKLQGNISESLGSMISMKSLDLSYNYLSGVIPKSLELLIYLQHINVSYNLLHGEIPSGGPFQNFTSESFIMNNDLCGKSQLQVHPCRKEHKHMSNKLKLVIKCSLPIICMVVILVLSGIVFLKCKKDHIKDSTNGDLINFETSTRISYYELWQGTNGFDESNLLGSGSFGLVYKPTLSTSKIVAVKVFKLEMDEALRSFDIECATMCNLRHRNFIKVISCCSNDHFKSLIMEFMENGSLDKWLYSHNYYLNVLQRLNIMIDVAVALEYLHHGSSTLVVHCDVKPNNVLLDEDMVAHLSDFGIAKLFGEGQLEIYTKTLATIGYMAPEYGSKGVVSIKGDVYSYGILLMEIFTRKKPTDEMFVQGLSLKDWHH 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2459 1080 SUPERFAMILY RNI-like 294 617 - -
Prci11g2459 1080 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 508 798 - -
Prci11g2459 1080 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 193 259 - -
Prci11g2459 1080 SUPERFAMILY L domain-like 534 786 - -
Prci11g2459 1080 ProSitePatterns Serine/Threonine protein kinases active-site signature. 985 997 IPR008271 GO:0004672|GO:0006468
Prci11g2459 1080 Gene3D Transferase(Phosphotransferase) domain 1 942 1080 - -
Prci11g2459 1080 SUPERFAMILY L domain-like 29 301 - -
Prci11g2459 1080 Pfam Leucine Rich Repeat 628 650 IPR001611 GO:0005515
Prci11g2459 1080 SMART LRR_typ_2 410 434 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 143 167 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 627 650 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 95 119 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 507 531 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 458 482 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 385 409 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 191 214 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 722 745 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 603 626 IPR003591 -
Prci11g2459 1080 SMART LRR_typ_2 215 239 IPR003591 -
Prci11g2459 1080 Gene3D Phosphorylase Kinase; domain 1 848 941 - -
Prci11g2459 1080 ProSiteProfiles Protein kinase domain profile. 866 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g2459 1080 ProSiteProfiles Leucine-rich repeat profile. 628 651 IPR001611 GO:0005515
Prci11g2459 1080 PANTHER LEUCINE RICH REPEAT KINASE 2 479 1069 - -
Prci11g2459 1080 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Prci11g2459 1080 SUPERFAMILY Protein kinase-like (PK-like) 847 1070 IPR011009 -
Prci11g2459 1080 SMART LRR_sd22_2 579 602 - -
Prci11g2459 1080 SMART LRR_sd22_2 215 247 - -
Prci11g2459 1080 SMART LRR_sd22_2 698 717 - -
Prci11g2459 1080 SMART LRR_sd22_2 626 642 - -
Prci11g2459 1080 SMART LRR_sd22_2 458 484 - -
Prci11g2459 1080 Pfam Protein kinase domain 867 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g2459 1080 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Prci11g2459 1080 Pfam Leucine rich repeat 700 759 IPR001611 GO:0005515
Prci11g2459 1080 Pfam Leucine rich repeat 169 228 IPR001611 GO:0005515
Prci11g2459 1080 Pfam Leucine rich repeat 556 615 IPR001611 GO:0005515
Prci11g2459 1080 SMART serkin_6 866 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci11g2459 1080 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 28 188 - -
Prci11g2459 1080 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 260 507 - -
Prci11g2459 1080 Gene3D Ribonuclease Inhibitor 192 360 IPR032675 -
Prci11g2459 1080 Gene3D Ribonuclease Inhibitor 361 504 IPR032675 -
Prci11g2459 1080 Gene3D Ribonuclease Inhibitor 505 796 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2459 Prci-Chr11 28979667 28999128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2459 6 1065 Receptor kinase-like Gene Family AT5G46330 35.236 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Prci11g2459 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2459 - K13420 pcin:129285519 1248.42