Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2352 ATGGAGCACAGCCAAGTTTTGCTGTCAGCATTGAGCATAGGGGTTGGTGTAGGAGCAAGGCTTGGATTAAGTTCAAGGCTTGGATGGAATCTTAACTCAAGTGAAGAGCTTTGGAACGAGCAGGTTGAGCAAGAGCTTCTCAGAAACGTGATTGATGGCAAGGAATGCCAGGAAACTTTTCAAGACTTTCCTTATTACTTAAGTGAAACAACTCGGGAGTTATTGATGAATGCTGCATTTGTTCATCTAAAACAACTTCACTTCTCTAGACACATCCAGAGCCTTCTACCGGCAAGTAGGGCAATTATACTTTCTGGACCTGAAGAACTTTACATGCAAACAATTGCCAAGGCTTTAGCCCATCACTTCCAATCAAAGTTGCTGCTGCTAGATATTGTTGACTTCACCTTAAAGATAAAGAGAAAATATGGATGTGCAGGAAAAAGAAAAGAACCATCTTTTAAAAGGTCCTTATCTAAGGTGGCTTCCAAGAGATTGCACAGTTTGTTTGGTTCCCTTTCAACTAGCGAAAATGAAGCTCCCTTGGAGAACAAAAGCAACATGTGCATTGATGAAAAACTCTTCATGAAGTTGCTTCATAAGGTCTTGGCTTCTATCTCAAAAAAAAGTTCCATCATATTATACGTTAGGGATGTTGAGATGTTGCTTCAATCAAAACAATTATATAACTTGTTTCATGAAATTCTAAAGAAACTTTCAGGGCCAATTTTAATACTTGGTTCCCAAGTTATTGATGTCGACAATGAAATAGAATATGAGTGGTCACAAGATTACATTGCTAAAGATGACGATGAAAGGCTTGCTGCATTATTTCCTTACAAGATTAAGATCAAACATCCTAAAGATGAGAATAATCTTCAAAACTGGGAATCCCAACTAGAGGAGAATGAGAAAAAAATTCAATCTCAAGATAATCAAAATCACATTGCGAAAGTACTGGCAGAAATTGATGTTGAATGTAAAGACTTGAATTCAATCAACCACGAGGAAACTGAGATACTAAGTAGACATATTGAAGAGATCGTTGTATCTGCGATATCTCACTATTTGATGAATACCAAGGATCTCGAATATGTGAATGGAAGGCTTGTAATATCTTATGAAAGTTTGTGCCACGGTTTGGATCTATTCCGCAAAAGTGATAGTGTCAAGGATACTGAAAAGCAAGAGGCAAGCTTGTGTCATGGTTTGGATCTATTTCACGAAAGTGATAATGTCAAGGATACTGAAAAGCAAGAGGCTGATGGAAAGGAAGATGTTTCTCCAGATAATAAGTATGAAAAGAACATAAGATCAGAGCTTATACCTGCAAGAGAGATAAGAGTTACATTTTCAGATATTGGTGCATTAGATGAAATCAAGGAATCACTCCAAGAGCTTATCATGCTTCCCCTTAAAAGACCAGACCTCTTCAAAGGTGGACTTCTTAAGCCATGCCGAGGTATATTACTGTTTGGACCACCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCAGGAGCAAGTTTCATCAATGTATCAATGTCTACCATCACATCAATGTGGTATGGAGAAGCTGAGAAGCATGTCCGAGCCTTATTCTCACTAGCTTCAAAGGTTTCTCCAACTATTATTTTCATTGATGAGGTTGATAGCTTGCTTGGGCAACGATCAAGATGTGGAGAACATGAGGCTACAAGGAGCATTAAGAATGAATTCATGACACATTGGGATGGTTTATTGACAAAACAAGACGAGCAAATTCTAGTTCTTGCTGCAACTAACAGGCCATTTGACCTTGATGATGCAATCATAAGACGGTTTCAACGAAGAATCATGGTTGGTCTTCCGTCAGTTGAGGCAAGGGAGATTATCTTGAAAACTCTGCTAGCTAAGGAAAATACTGAAAATTTAGACTTTATAGAGCTTGCACTCATGACAGAGGGATATACTGGAAGTGATATCCAGAATTTGTGCACTGTTGCTGCTTATCGGCCTATTAGGGAGCTAATAAAGCAGGAGAGATTGAAGGATATGGAAAAGAATAAGAAAGACACTCAAGGCCAAAGTTTGGAAGTTGCTTTATGTCCCATAGATGATGCACAGGAGCAAGAAAAGAATAAGAAAGAGGTTGAAGACCAAAGCTCAAAGGCTACTTCAAGAGCTAAAGAGGACAAAGAACATCCAGTAATTACCTTAAGGCCTATAAACATGGAAGACATGATTCAGGCGAAGAATCAGGTTCCTGCAAGTTTTGATGCTCACGGATTGATAATGCGTGAGTTGAAGCAGTGGAACAAGCTGTATGGAGAACGAGGCTTGTGA 2337 0.389 MEHSQVLLSALSIGVGVGARLGLSSRLGWNLNSSEELWNEQVEQELLRNVIDGKECQETFQDFPYYLSETTRELLMNAAFVHLKQLHFSRHIQSLLPASRAIILSGPEELYMQTIAKALAHHFQSKLLLLDIVDFTLKIKRKYGCAGKRKEPSFKRSLSKVASKRLHSLFGSLSTSENEAPLENKSNMCIDEKLFMKLLHKVLASISKKSSIILYVRDVEMLLQSKQLYNLFHEILKKLSGPILILGSQVIDVDNEIEYEWSQDYIAKDDDERLAALFPYKIKIKHPKDENNLQNWESQLEENEKKIQSQDNQNHIAKVLAEIDVECKDLNSINHEETEILSRHIEEIVVSAISHYLMNTKDLEYVNGRLVISYESLCHGLDLFRKSDSVKDTEKQEASLCHGLDLFHESDNVKDTEKQEADGKEDVSPDNKYEKNIRSELIPAREIRVTFSDIGALDEIKESLQELIMLPLKRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSMWYGEAEKHVRALFSLASKVSPTIIFIDEVDSLLGQRSRCGEHEATRSIKNEFMTHWDGLLTKQDEQILVLAATNRPFDLDDAIIRRFQRRIMVGLPSVEAREIILKTLLAKENTENLDFIELALMTEGYTGSDIQNLCTVAAYRPIRELIKQERLKDMEKNKKDTQGQSLEVALCPIDDAQEQEKNKKEVEDQSSKATSRAKEDKEHPVITLRPINMEDMIQAKNQVPASFDAHGLIMRELKQWNKLYGERGL 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2352 778 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 448 623 - -
Prci11g2352 778 SMART AAA_5 485 622 IPR003593 GO:0016887
Prci11g2352 778 Pfam ATPase family associated with various cellular activities (AAA) 489 619 IPR003959 GO:0005524|GO:0016887
Prci11g2352 778 Coils Coil 705 725 - -
Prci11g2352 778 Coils Coil 286 313 - -
Prci11g2352 778 Gene3D - 449 621 IPR027417 -
Prci11g2352 778 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 41 775 - -
Prci11g2352 778 MobiDBLite consensus disorder prediction 706 734 - -
Prci11g2352 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 676 IPR027417 -
Prci11g2352 778 Gene3D - 622 755 - -
Prci11g2352 778 Pfam AAA+ lid domain 642 685 IPR041569 -
Prci11g2352 778 ProSitePatterns AAA-protein family signature. 592 611 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2352 Prci-Chr11 25277745 25284881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2352 435 680 Calmodulin-binding Proteins AT3G56690 37.743 7.77e-41 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2352 - - pcin:129285842 1039.64