Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2351 ATGGAGCACAGCCAAGTTTTGCTGTCAGCATTGAGCATAGGGGTTGGTGTAGGAGCAAGGCTTGGATTAAGTTCAAGGCTTGGATGGAATCTTAACTCAAGTGAAGAGCTTTGGAACGAGCAGGTTGAGCAAGAGCTTCTCAGAAACGTGATTGATGGCAAGGAATGCCAGGAAACTTTTCAAGACTTTCCTTATTACTTAAGTGAAACAACTCGGGAGTTATTGATGAATGCTGCATTTGTTCATCTAAAACAACTTCACTTCTCTAGACACATCCAGAGCCTTCTACCGGCAAGTAGGGCAATTATACTTTCTGGACCTGAAGAACTTTACATGCAAACAATTGCCAAGGCTTTAGCCCATCACTTCCAATCAAAGTTGCTGCTGCTAGATATTGTTGACTTCACCTTAAAGATAAAGAGAAAATATGGATGTGCAGGAAAAAGAAAAGAACCATCTTTTAAAAGGTCCTTATCTAAGGTGGCTTCCAAGAGATTGCACAGTTTGTTTGGTTCCCTTTCAACTAGCGAAAATGAAGCTCCCTTGGAGAACAAAAGCAACATGTGCATTGATGAAAAACTCTTCATGAAGTTGCTTCATAAGAAACTTTCAGGGCCAATTTTAATACTTGGTTCCCAAGTTATTGATGTCGACAATGAAATAGAATATGAGTGGTCACAAGATTACATTGCTAAAGATGACGATGAAAGGCTTGCTGCATTATTTCCTTACAAGATTAAGATCAAACATCCTAAAGATGAGAATAATCTTCAAAACTGGGAATCCCAACTAGAGGAGAATGAGAAAAAAATTCAATCTCAAGATAATCAAAATCACATTGCGAAAGTACTGGCAGAAATTGATGTTGAATGTAAAGACTTGAATTCAATCAACCACGAGGAAACTGAGATACTAAGTAGACATATTGAAGAGATCGTTGTATCTGCGATATCTCACTATTTGATGAATACCAAGGATCTCGAATATGTGAATGGAAGGCTTGTAATATCTTATGAAAGAATTCACAGTTTGTGCCACGGTTTGGATCTATTCCGCAAAAGTGATAGTGTCAAGGATACTGAAAAGCAAGAGGCAAGCTTGTGTCATGGTTTGGATCTATTTCACGAAAGTGATAATGTCAAGGATACTGAAAAGCAAGAGGCTGATGGAAAGGAAGATGTTTCTCCAGATAATAAGTATGAAAAGAACATAAGATCAGAGCTTATACCTGCAAGAGAGATAAGAGTTACATTTTCAGATATTGGTGCATTAGATGAAATCAAGGAATCACTCCAAGAGCTTATCATGCTTCCCCTTAAAAGACCAGACCTCTTCAAAGGTGGACTTCTTAAGCCATGCCGAGGTATATTACTGTTTGGACCACCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCAGGAGCAAGTTTCATCAATGTATCAATGTCTACCATCACATCAATGTGGTATGGAGAAGCTGAGAAGCATGTCCGAGCCTTATTCTCACTAGCTTCAAAGGTTTCTCCAACTATTATTTTCATTGATGAGGTTGATAGCTTGCTTGGGCAACGATCAAGATGTGGAGAACATGAGGCTACAAGGAGCATTAAGAATGAATTCATGACACATTGGGATGGTTTATTGACAAAACAAGACGAGCAAATTCTAGTTCTTGCTGCAACTAACAGGCCATTTGACCTTGATGATGCAATCATAAGACGGTTTCAACGAAGAATCATGGTTGGTCTTCCGTCAGTTGAGGCAAGGGAGATTATCTTGAAAACTCTGCTAGCTAAGGAAAATACTGAAAATTTAGACTTTATAGAGCTTGCACTCATGACAGAGGGATATACTGGAAGTGATATCCAGAATTTGTGCACTGTTGCTGCTTATCGGCCTATTAGGGAGCTAATAAAGCAGGAGAGATTGAAGGATATGGAAAAGAATAAGAAAGACACTCAAGGCCAAAGTTTGGAAGTTGCTTTATGTCCCATAGATGATGCACAGGAGCAAGAAAAGAATAAGAAAGAGGTTGAAGACCAAAGCTCAAAGGCTACTTCAAGAGCTAAAGAGGACAAAGAACATCCAGTAATTACCTTAAGGCCTATAAACATGGAAGACATGATTCAGGCGAAGAATCAGGTTCCTGCAAGTTTTGATGCTCACGGATTGATAATGCGTGAGTTGAAGCAGTGGAACAAGCTGTATGGAGAACGAGGCTTGTGA 2238 0.3932 MEHSQVLLSALSIGVGVGARLGLSSRLGWNLNSSEELWNEQVEQELLRNVIDGKECQETFQDFPYYLSETTRELLMNAAFVHLKQLHFSRHIQSLLPASRAIILSGPEELYMQTIAKALAHHFQSKLLLLDIVDFTLKIKRKYGCAGKRKEPSFKRSLSKVASKRLHSLFGSLSTSENEAPLENKSNMCIDEKLFMKLLHKKLSGPILILGSQVIDVDNEIEYEWSQDYIAKDDDERLAALFPYKIKIKHPKDENNLQNWESQLEENEKKIQSQDNQNHIAKVLAEIDVECKDLNSINHEETEILSRHIEEIVVSAISHYLMNTKDLEYVNGRLVISYERIHSLCHGLDLFRKSDSVKDTEKQEASLCHGLDLFHESDNVKDTEKQEADGKEDVSPDNKYEKNIRSELIPAREIRVTFSDIGALDEIKESLQELIMLPLKRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSMWYGEAEKHVRALFSLASKVSPTIIFIDEVDSLLGQRSRCGEHEATRSIKNEFMTHWDGLLTKQDEQILVLAATNRPFDLDDAIIRRFQRRIMVGLPSVEAREIILKTLLAKENTENLDFIELALMTEGYTGSDIQNLCTVAAYRPIRELIKQERLKDMEKNKKDTQGQSLEVALCPIDDAQEQEKNKKEVEDQSSKATSRAKEDKEHPVITLRPINMEDMIQAKNQVPASFDAHGLIMRELKQWNKLYGERGL 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2351 745 ProSitePatterns AAA-protein family signature. 559 578 IPR003960 GO:0005524|GO:0016887
Prci11g2351 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 643 IPR027417 -
Prci11g2351 745 Coils Coil 672 692 - -
Prci11g2351 745 Gene3D - 416 588 IPR027417 -
Prci11g2351 745 MobiDBLite consensus disorder prediction 673 701 - -
Prci11g2351 745 Coils Coil 250 277 - -
Prci11g2351 745 Gene3D - 589 722 - -
Prci11g2351 745 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 41 742 - -
Prci11g2351 745 SMART AAA_5 452 589 IPR003593 GO:0016887
Prci11g2351 745 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 415 590 - -
Prci11g2351 745 Pfam ATPase family associated with various cellular activities (AAA) 456 586 IPR003959 GO:0005524|GO:0016887
Prci11g2351 745 Pfam AAA+ lid domain 608 652 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2351 Prci-Chr11 25277745 25284881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2351 402 647 Calmodulin-binding Proteins AT3G56690 37.743 7.84e-41 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2351 - - pcin:129285842 979.933