Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2329 ATGACGCCTCCACTTAAACACTCGCTGTCGCTCCGTCACAAGGAAGTCTCAAATTTTCTAGCGAGAGAAACTGTTGCTGCCATGGCTGCTCCTAATCCTACGCACCTCCCGGACCACTTCAAGTGTCCGATTTCGCTCGAGATAATGTCCGACCCGGTTATCCTGTCTTCGGGTCACACCTTCGACCGGTCTTCAATCCAGCGCTGGCTCGACGCCGGCCACCGGACTTGTCCGATTACCAAACTACCCCTCCCTGATTGCCCTTCCCTCATCCCCAATCACGCTCTCAGAAGCTTGATTTCAAGCTATTATCATATCTCATCATTCAAGCAGCATCCTCCTCCCCAACCGGAAACCCTAGTTTTTTCCATTACCTCTCGCTCGTCGTCGCTGGAGAGCAGAATTGAATTGCTGGACCAACTTACGCGCCTTTCCAAGCGTGACTCGGTTTTCCGTCGGCGGTTGACTGAGTCAGGAGTCGTGTCGGCGGTGCTGCACTGCGTTGACTCTGGTGAGCCTAGTCTACAGGAGAAAGCGCTTTCGTTGTTGCTCAACCTTAGTCTCGACGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGCGATCGGGAAGGTTGTGGCTGTTCTGTTAGGTGGCTCATCGGATTGCCGAGCAGTGGCGGCAACCATGTTGACGAGTTTGGCGGTCGTGGAGGTGAACAAAGCCACCATTGGTGCGTATCCATATGCTATAGGAGCTCTTGTTTCTCTTCTTCGAGATGGTGAAGGCAGAGAGAAGAAAGAAGCGGCCACAGCGCTCTATGCTATATGTTCTTTTCCAGATAATCGTAGGAGAGCCGTAGAATGTGGGGCAGTCCCGATTTTGTTAAGAAGTGTTGATTCTGGTCTTGAAAGGGCTGTTGAAGTTCTTGGTGTGCTGGCTAAGTGTCGGGAAGGTAGAGAACAAATGGAAAGGTATAATGGATGCGTTCAGATTTTAGCGCGGGTGCTGAGAAATGGAAGCTCGAGGGGAATTCAATATGCCTTGTTGGCACTGAATTCCCTTTGTAATAGTGAAAAAATGGTTCTGGAGGCGACTAAAGGGGGAATTTTGGAGATTTGTCTGGGATTACTGGAGGATGATAATGAAAAAATAAGGAGAAATTCATCCAGTTTGATTAAGGTTCTGCGTGGCAATCGTAGGAAGAGTTGA 1191 0.5004 MTPPLKHSLSLRHKEVSNFLARETVAAMAAPNPTHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDCPSLIPNHALRSLISSYYHISSFKQHPPPQPETLVFSITSRSSSLESRIELLDQLTRLSKRDSVFRRRLTESGVVSAVLHCVDSGEPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGKVVAVLLGGSSDCRAVAATMLTSLAVVEVNKATIGAYPYAIGALVSLLRDGEGREKKEAATALYAICSFPDNRRRAVECGAVPILLRSVDSGLERAVEVLGVLAKCREGREQMERYNGCVQILARVLRNGSSRGIQYALLALNSLCNSEKMVLEATKGGILEICLGLLEDDNEKIRRNSSSLIKVLRGNRRKS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2329 396 Gene3D - 115 296 IPR011989 -
Prci11g2329 396 Gene3D - 297 390 IPR011989 -
Prci11g2329 396 FunFam RING-type E3 ubiquitin transferase 35 107 - -
Prci11g2329 396 CDD RING-Ubox_PUB 37 86 IPR045210 -
Prci11g2329 396 PANTHER U BOX DOMAIN-CONTAINING 26 387 - -
Prci11g2329 396 SMART arm_5 272 308 IPR000225 GO:0005515
Prci11g2329 396 SMART arm_5 309 350 IPR000225 GO:0005515
Prci11g2329 396 SMART arm_5 189 229 IPR000225 GO:0005515
Prci11g2329 396 SMART arm_5 148 188 IPR000225 GO:0005515
Prci11g2329 396 SUPERFAMILY RING/U-box 33 105 - -
Prci11g2329 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 110 IPR013083 -
Prci11g2329 396 Pfam U-box domain 37 104 IPR003613 GO:0004842|GO:0016567
Prci11g2329 396 SUPERFAMILY ARM repeat 128 389 IPR016024 -
Prci11g2329 396 SMART Ubox_2 39 103 IPR003613 GO:0004842|GO:0016567
Prci11g2329 396 ProSiteProfiles U-box domain profile. 35 110 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2329 Prci-Chr11 24711575 24713181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2329 36 391 U-box Gene Family AT4G21350 61.644 8.55e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2329 - - pcin:129286672 739.184