Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2319 ATGGATTATGCAGAAGAGAATGGGTTCTGTACTACTTTTGAAGATTTTTGTGACCTTAACAACAACGAAGGAGGCAGCATCAGAAGAAGCATGATCCGGAAGAGAAGATATGGAGATAATGATAATAATAATAATCATGATGATGAAGAAAATGACGATGGCACAAGATTCAAATCCAAGAACCTCCAGACTGAGAGGAAGAGGAGAGAGAAGCTCAGCAGTAGACTCTTGATGCTGCGATCTTTAGTCCCAATCATCACAAATATGACCAGAGCTTGCATAATTGATGATGCCATCACCTACATCAAGAAAATGCAAACCCAGGTGGAGAGTCTCACTCAGGAGCTTCAAACAATGGAAGCAAAGGCGAATTCGCAGCCCCTGAAAACAGAAAATCAGCTGAAAATAGATGAATCGGAGGAGGAAGAGGAGGAGGAAGACATGAAGAAATGTGGTACTCAGGTAGAGGTGAAGGTGACTCAAATTGATGTGAACAAGCTGTGGATGAAGATCATCATTGAGCAGAGAAGAGGAAGAGTGAAGAAATTGATTGAAGCCATGAATTCTCTTGGCATCGATCTCTTAGACATCAATGTCACCACCATAAAAGGAGCTTTCCTCATCACCACCTCCATTCAGGAAAACAATGGTGAAAGGATTGGAGCAAAGGAAACTCAGGAGTTAATGCTTGATGTTATTAGGACTATATAG 711 0.4135 MDYAEENGFCTTFEDFCDLNNNEGGSIRRSMIRKRRYGDNDNNNNHDDEENDDGTRFKSKNLQTERKRREKLSSRLLMLRSLVPIITNMTRACIIDDAITYIKKMQTQVESLTQELQTMEAKANSQPLKTENQLKIDESEEEEEEEDMKKCGTQVEVKVTQIDVNKLWMKIIIEQRRGRVKKLIEAMNSLGIDLLDINVTTIKGAFLITTSIQENNGERIGAKETQELMLDVIRTI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2319 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 124 IPR036638 GO:0046983
Prci11g2319 236 Gene3D - 45 122 IPR036638 GO:0046983
Prci11g2319 236 MobiDBLite consensus disorder prediction 121 150 - -
Prci11g2319 236 SMART finulus 62 111 IPR011598 GO:0046983
Prci11g2319 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 105 IPR011598 GO:0046983
Prci11g2319 236 Coils Coil 95 122 - -
Prci11g2319 236 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 216 - -
Prci11g2319 236 Pfam Helix-loop-helix DNA-binding domain 62 106 IPR011598 GO:0046983
Prci11g2319 236 MobiDBLite consensus disorder prediction 35 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2319 Prci-Chr11 24496522 24497774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2319 50 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 41.711 1.41e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci11g2319 HLH 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2319 - - pcin:129286892 419.468