Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2277 ATGGCTGCTTCAAACATTCATTATCCTATAAAGAGCAAATTAGTGAAGCCAGTTGAAGCCAACAAAAAGGGAGCTTGGACACCTGAAGAAGATACCAAACTAGCTGAAGCCATCGCAGTTCATGGCGCCAAAAGGTGGAAATCGATTGCAGCTAAAGCAGGTCTTGATAGGAATGGTAAGAGTTGCAGGCTAAGATGGTTGAACTATCTGAGACCAAACATCAAGAGGGGGAACATATCAGACCAAGAAGAGGATTTGATACTTCGCCTTCACAAACTGGTCGGAAACAGGTGGTCTTTGATTGCTGGAAGGTTACCAGGACGAACAGACAATGAAATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATGAAGCAGAGAGAGAAGAAGGAGAAGGAGAACCAAATAGAGTGTTCATCGTCGACAAGAGATCATCATGAGAAAGACGAAAGACTAGTAGAGGTGATGGCGGAAGAGAGTAATAATAATGATATTCCTGCAGAGGCAACATTGGAGACAACAGTGGAAGAAGAGAATCCAAATGAAGAAGAGGATGAACAATATTCGTCCAAGTTCTTCAATTTTGATGAGAATGATGGGTTGTTCGATTTTTTGGATGAAGGTCCATTGAATTTGGAGTGGCCTAGCAAATTCCTCGAATTCAATTAG 672 0.4137 MAASNIHYPIKSKLVKPVEANKKGAWTPEEDTKLAEAIAVHGAKRWKSIAAKAGLDRNGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLVGNRWSLIAGRLPGRTDNEIKNYWNSHLSKKMKQREKKEKENQIECSSSTRDHHEKDERLVEVMAEESNNNDIPAEATLETTVEEENPNEEEDEQYSSKFFNFDENDGLFDFLDEGPLNLEWPSKFLEFN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2277 223 FunFam MYB-related transcription factor 22 75 - -
Prci11g2277 223 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Prci11g2277 223 Gene3D - 80 155 - -
Prci11g2277 223 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Prci11g2277 223 Pfam Myb-like DNA-binding domain 76 121 IPR001005 -
Prci11g2277 223 CDD SANT 80 121 IPR001005 -
Prci11g2277 223 SMART sant 75 123 IPR001005 -
Prci11g2277 223 SMART sant 22 72 IPR001005 -
Prci11g2277 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Prci11g2277 223 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Prci11g2277 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Prci11g2277 223 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 19 178 - -
Prci11g2277 223 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Prci11g2277 223 MobiDBLite consensus disorder prediction 127 190 - -
Prci11g2277 223 MobiDBLite consensus disorder prediction 127 158 - -
Prci11g2277 223 CDD SANT 25 70 IPR001005 -
Prci11g2277 223 Gene3D - 15 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2277 Prci-Chr11 23595858 23597082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2277 22 163 MYB Transcription Factor Family AT5G52600 52.632 1.96e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci11g2277 Myb_DNA-binding 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2277 K09422 - rcu:8284657 233.417