Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2252 ATGGGGAGAGCAAGGATTGCGATTAAGAGGATTGACGATTCAACGAGCAGGCAAGTGACTTTCTCAAAGAGAAAAAGTGGATTGCTCAAGAAAGCTAGGGAGCTTTCGATCCTCTGCGAGGCACAAGTTGGAGTTATCGTCTTCTCCAGCTCTGGCAAGCTCTATGAATATGGAAGCTCCAGTGTGAAATCTATTATTGACCGCTACAATGAACAAATAGAAGAACAACATTTTCGGCTTATAGATCCTGTTTCAGAAGTTAAGTTTTGGCAGACAGAAGCAACAGTCTTGAGGCAGCAACTGCAACGCTTGCAAGAAAGCCACAGGCAATTGATGGGTGAACAACTATCCGGTTTGGGCTTGAACGAATTGCGAAGTTTGGAAAATCAACTGGGGATAAGTTTAAAAAGCGTTCGGATCAAAAAGGTTTGA 432 0.4329 MGRARIAIKRIDDSTSRQVTFSKRKSGLLKKARELSILCEAQVGVIVFSSSGKLYEYGSSSVKSIIDRYNEQIEEQHFRLIDPVSEVKFWQTEATVLRQQLQRLQESHRQLMGEQLSGLGLNELRSLENQLGISLKSVRIKKV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2252 143 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g2252 143 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Prci11g2252 143 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g2252 143 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2252 143 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Prci11g2252 143 ProSiteProfiles K-box domain profile. 87 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2252 143 Coils Coil 87 114 - -
Prci11g2252 143 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2252 143 Pfam K-box region 85 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2252 143 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Prci11g2252 143 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2252 143 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2252 143 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2252 143 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Prci11g2252 143 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2252 Prci-Chr11 23230980 23236103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2252 1 142 MADS-box Gene Family AT4G37940 67.133 2.21e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g2252 K-box 8.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2252 K09264 - gmx:100808145 204.527