Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2249 ATGGGCAGAGCAAAGATTGCGATCAAGAGGATCGATGATTCAACGAACAGGCAAGTGACTTTCTCAAAAAGAAGAAGTGGATTGTTCAAGAAAGCGAGGGAGCTTGCGATCCTCTGCGACGCACAAGTTGGTGTTATTGTCTTCTCCAGCTCCGGCAAGCTCTATGAATATGGAAGCTCCAGCAGCATGAAATCTATTATTGATCGCTACAATGAACAGAAAGGGGACCATTGTCAGCTACTAGATCCTGCTTCAGAAGTCAAGTTTTGGCAAAGAGAAGCAACAGTTTTGAGGCAACAACTGCAACACTTGCAAGAATGCCACAGGCAATTGATGGGTGAACAAATTTCTGGTTTGAGCATTAATGAATTGCGAAATTTGGAAAATCAACTTGGGATAAGTTTAAGAAGCGTCCGGATCAAAAAGGAACAATGTTTAAAGGATGAGATTAAAAAGTTGCATCAAAAGGGATATCAAATTAGTCAAGAAAATGTAGAACTCTATAAAAGGATTAAAGTCATTAGTAAAGAAAATGCAGAATTACAGAAGACTTGTGAAGCGTTGCATGCACCAACCTATCTACAGCTGAGACAGCCACAGCCTCAATCTTATTACAGATGCTTAGCAACAGCTCTTTCCTGTGGGAAGATCAAGTTTTCTGCAGCGGAGATTGTTAGAATCAAAACAGCATCAATTCCATATATATGA 708 0.4011 MGRAKIAIKRIDDSTNRQVTFSKRRSGLFKKARELAILCDAQVGVIVFSSSGKLYEYGSSSSMKSIIDRYNEQKGDHCQLLDPASEVKFWQREATVLRQQLQHLQECHRQLMGEQISGLSINELRNLENQLGISLRSVRIKKEQCLKDEIKKLHQKGYQISQENVELYKRIKVISKENAELQKTCEALHAPTYLQLRQPQPQSYYRCLATALSCGKIKFSAAEIVRIKTASIPYI 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2249 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2249 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2249 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2249 235 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2249 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Prci11g2249 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g2249 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g2249 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2249 235 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Prci11g2249 235 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Prci11g2249 235 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Prci11g2249 235 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Prci11g2249 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2249 235 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2249 Prci-Chr11 23179513 23185044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2249 1 204 MADS-box Gene Family AT4G37940 58.937 1.97e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g2249 K-box 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2249 K09264 - qsa:O6P43_012453 270.396