Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2246 ATGGGGAAAAAGAAGATTGCGATTGAGAGGATTGACAATTTAGCGAACAGGCAAGTGACTTTCTCAAAGAGAAGAGGTGGATTGCTCAAGAAAGCCAAGGAGCTTTCGATCCTCTGTGGCGGCCAAGTTGGTTTGATCATCTACTCCAGTACTGGCAAGCTCTATGAATATGGAAGCTCCAGCATGAAGTCAATTATTGACCGCTACAATAAACAAAAAGAGGAACATCATCCGCTTATGAATCAAGCTTCAGAATCCAAGTTGTGGCAGAGAGAAGCAACGATCTTGAGGCAGAAACTGCAACACTTGCAGGAATTGCACTGGCAATTGATGGGTGAACAACTTTCTGGTTTGAACATTAATGAATTGAAAAATTTGGAAAATCAAATGGAGATGAGTTTGAAGAATTTCCAAATCAAAAGGGATCATATTTTAACTGAAGAGATTAAAGAGCTACAACAAAAGGAAAATCAAATTCGTCAAGAAATTGTACAACTCCATAAACTGATAGAAGTCATCACTAAAGAAAATGCAGAATTACAGACTAAGATTTGTGAAGAAAGGGTTATGAATGAGGAAAATGGGAATTCTAATCCTACAAACACTATCAGCAACAAGTATGGATTACATTCACCTATCCATCTTGAGCTGAGCCAGCCACAGTCTCAAAGTACTGAATCACCAGCTAAAGCGTCGAAATTGGAGTATAATCCATCAAACTCATAA 726 0.3843 MGKKKIAIERIDNLANRQVTFSKRRGGLLKKAKELSILCGGQVGLIIYSSTGKLYEYGSSSMKSIIDRYNKQKEEHHPLMNQASESKLWQREATILRQKLQHLQELHWQLMGEQLSGLNINELKNLENQMEMSLKNFQIKRDHILTEEIKELQQKENQIRQEIVQLHKLIEVITKENAELQTKICEERVMNEENGNSNPTNTISNKYGLHSPIHLELSQPQSQSTESPAKASKLEYNPSNS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2246 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2246 241 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Prci11g2246 241 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2246 241 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Prci11g2246 241 MobiDBLite consensus disorder prediction 213 241 - -
Prci11g2246 241 Coils Coil 120 140 - -
Prci11g2246 241 Coils Coil 142 183 - -
Prci11g2246 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2246 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2246 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2246 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2246 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 - -
Prci11g2246 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2246 241 MobiDBLite consensus disorder prediction 215 241 - -
Prci11g2246 241 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Prci11g2246 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2246 Prci-Chr11 23085221 23090127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2246 1 231 MADS-box Gene Family AT4G37940 49.784 1.12e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g2246 K-box 8.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2246 K09264 - gmx:100808145 297.745