Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2245 ATGGGGAAAAGGAAGATTGCGATTGAGAGGATTGACAATTTATCGAACAGGCAAGTGACTTTTTCAAAGAGAAGAAGTGGATTGATCAAGAAAGCAAAGGAGCTTTCGATCCTCTGTGACTCTCAAGTTGGTTTGATCGTCTACTCCAGCACCGGCAAGCTCTATGAATACGGAAGCTGCAGCATGAAGTCAATTATTGACCGATACAATAAACAAAAAGAGGAACATCATCCGCTTATGAATCAAGCTTCAGAAGCCAAGTTTTGGCAGAGAGAAGCAACGGTCTTGAGGCAAGAACTGCAACAATTGCAGGAATTGCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTGGGCATTAACGATTTGAAAAATTTGGGAAATCAACTGGAGATGAGTTTGAAGAATGTCCACATCAAAAGGGTATGA 429 0.4149 MGKRKIAIERIDNLSNRQVTFSKRRSGLIKKAKELSILCDSQVGLIVYSSTGKLYEYGSCSMKSIIDRYNKQKEEHHPLMNQASEAKFWQREATVLRQELQQLQELHRQLMGEQLSGLGINDLKNLGNQLEMSLKNVHIKRV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2245 142 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2245 142 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2245 142 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2245 142 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 139 - -
Prci11g2245 142 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2245 142 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Prci11g2245 142 Coils Coil 86 113 - -
Prci11g2245 142 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2245 142 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Prci11g2245 142 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Prci11g2245 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g2245 142 ProSiteProfiles K-box domain profile. 86 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2245 142 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Prci11g2245 142 Pfam K-box region 82 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2245 Prci-Chr11 23073475 23077943 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2245 1 141 MADS-box Gene Family AT4G37940 65.957 1.24e-66 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g2245 K-box 5.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2245 K09264 - zju:112492935 204.142