Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2243 ATGGGGAGAGGAAAGATTGCGATTAAGAGGATTGACAATTCAACGAACAGGCAAGTGACTTTCTCAAAGAGAAGAAGTGGATTGCTTAAGAAAGCGAGGGAGCTTTCGATCCTCTGCGACGCACAAATTGGTGTCATCGTCTTCTCCAGCTCCGGCAAGCTCTATGAATATGGAAGCTCCAGCATGAAATCTATTATTGACCGCTACAGTGAACAACAAGGGGATCATTGTCAGCTTCTAGATCCTGCTTCAGAAGTCAAGTTTTGGCAAAGAGAAGCAACAGTCTTGAGGCAACAACTTCAACAGTTTCAAGAATACCACAGGCAATTGATGGGTGAAAAACTTTCTAGCTTGAGCATCAATGAATTGCAAAATTTGGAAAATCAACTGGGGAAAAGTTTAAGAAGTGTCCGGATCAAAAAGGAACAAGTTTTAAAGGACGAGATTAAAGAGCTGCAACAAAAGGGATATCAATTTAGTCAAGAAAGCGTAGAACTCTATAAAAGGATTGAAGTCATTAGTAAAGAAAATGCAGAATTACAGAAGGTAAGCTATTAA 558 0.3978 MGRGKIAIKRIDNSTNRQVTFSKRRSGLLKKARELSILCDAQIGVIVFSSSGKLYEYGSSSMKSIIDRYSEQQGDHCQLLDPASEVKFWQREATVLRQQLQQFQEYHRQLMGEKLSSLSINELQNLENQLGKSLRSVRIKKEQVLKDEIKELQQKGYQFSQESVELYKRIEVISKENAELQKVSY 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2243 185 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Prci11g2243 185 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Prci11g2243 185 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g2243 185 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Prci11g2243 185 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Prci11g2243 185 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2243 185 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2243 185 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Prci11g2243 185 Coils Coil 123 143 - -
Prci11g2243 185 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2243 185 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2243 185 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2243 185 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2243 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g2243 185 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2243 Prci-Chr11 22988294 22992279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2243 1 169 MADS-box Gene Family AT4G37940 62.130 3.30e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g2243 K-box 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2243 K09264 - mnt:21397917 261.922