Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2241 ATGGGAAGAGCAAAGATTGCGATTAAGAGGATCGATGATTCAACGAACAGGCAAGTGACTTTCTCAAAGAGAAGAAGTGGATTGCTCAAGAAAGCGAGGGAGCTTTCGATCCTCTGCGACGCACAAGTTGGTGTTATCGTCTTCTCCAGCTCCGGCAAGCTCTATGAATATGGAAGCTCCAGCATGAAATCTATTATTGACGGTTACAATGAACAAAAAGGGGATCACTCTAAGCTTATAGATCCTGCTTCAGAAGTCAAGTTTTGGCGAAGAGAAGCAACAGTCTTGAGGCAACAACTTCGACATTTGCAAGAATGCTACAGGCAATTGATGGGTGAACAACTTTCTAGTTTGAGCAATAATGACTTGCGAAATTTGGAAAATCAACTGGGGATAAGTTTAAGAAATGTCCGGATCAAAAAGGAACAAGTTTTAAAGGATGAGATTAAAGGGCTGCAACAAAAGGGATATCAATATAGTCAAGAAAACGTAGAACTCTATAAAAGGATTGAAGTCATTAGTAAAGAAAATGCAGAATTACAGAAGATTACAGCTGCTTTAGCAACGGCTCTTTCCTGTAGGAAGATCAAGTTTTCTGCAGGGAAGATAGAATCAAAACAGCATCAATTCCCATATATTTGA 642 0.3956 MGRAKIAIKRIDDSTNRQVTFSKRRSGLLKKARELSILCDAQVGVIVFSSSGKLYEYGSSSMKSIIDGYNEQKGDHSKLIDPASEVKFWRREATVLRQQLRHLQECYRQLMGEQLSSLSNNDLRNLENQLGISLRNVRIKKEQVLKDEIKGLQQKGYQYSQENVELYKRIEVISKENAELQKITAALATALSCRKIKFSAGKIESKQHQFPYI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2241 213 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Prci11g2241 213 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2241 213 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Prci11g2241 213 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2241 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2241 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2241 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2241 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2241 213 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Prci11g2241 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2241 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g2241 213 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g2241 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Prci11g2241 213 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2241 Prci-Chr11 22918351 22921656 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2241 1 169 MADS-box Gene Family AT4G37940 62.722 2.96e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g2241 K-box 5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2241 K09264 - qsa:O6P43_012453 254.988