Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2240 ATGGGAAGAGGAAAGATTGCGATTAAGAGAATTGACAATTCAACGAACAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGTTTGCTCAAGAAAGCCAGAGAGCTTTCGATCCTCTGTGACGCACAAGTTGGGGTTATTGTGTTTTCCAGCACCAGCAAGCTCTATGAATATGGAAGCTCCAGCATGATGTCAATTATTGAGCGCTATAATAAACAAAAGGAGGAGCATCATCATCCGCTTATGAATCCAGCTTCAGAAGCAAAGTTTTGGCAGACAGAAGCAACGGTCTTGAGGCAGCAACTGCAACACTTGCAGGAATCGCACAGGCAATTGATGGGTGAACAACTTTCTGGTTTGGGCATTAATGAATTGAAAAATTTGGAAAATCAACTGGAGATGAGTTTGAAGAATGTCCAAATCAAAAAAGATCAAATTTTAACTGAAGAGATTAAAGAGCTACAACAAAAGGGTAATCAAATTCGGCAAGAAAATGTAGAACTCCATAAAACGATACAAGTCATCAGTGAAGAAAATGCAGAATTACAGACGAAGGTATTTATCTTTTCATTGATATCATTTAATCCAGTCTCAAGGGCAGATATGATTATAGAATCAACAAGTTGTCCCTTAACTACACAAGAACAGAGGAGGGAAGAGGAAGACACCACCTAG 672 0.3914 MGRGKIAIKRIDNSTNRQVTFSKRRNGLLKKARELSILCDAQVGVIVFSSTSKLYEYGSSSMMSIIERYNKQKEEHHHPLMNPASEAKFWQTEATVLRQQLQHLQESHRQLMGEQLSGLGINELKNLENQLEMSLKNVQIKKDQILTEEIKELQQKGNQIRQENVELHKTIQVISEENAELQTKVFIFSLISFNPVSRADMIIESTSCPLTTQEQRREEEDTT 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2240 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g2240 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2240 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2240 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2240 223 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2240 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2240 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Prci11g2240 223 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Prci11g2240 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2240 223 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Prci11g2240 223 Coils Coil 94 114 - -
Prci11g2240 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g2240 223 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Prci11g2240 223 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2240 223 Coils Coil 121 170 - -
Prci11g2240 223 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2240 Prci-Chr11 22899739 22906919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2240 1 186 MADS-box Gene Family AT2G22630 59.140 9.98e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g2240 K-box 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2240 K09264 - gmx:100808145 288.5