Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2236 ATGGGAAGAGGGAAGATTGTGATTAAGAGGATTGACGATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTCAAGAAAGCAAGAGAGCTTTCGATTCTCTGCGACGCACAAGTTGGAGTCATTGTGTTCTCCAGCACAGGCAAACTCTATGAATATGGAAGCTCCAGCATGAAATCTACTATTGAGCGCTACAACAAAGTAAAACTGGAACACCATCATCATATGAATCCTGAATCGGAAGTGAAGTTTTGGCAGAGAGAAGTGATAGTATTGAGGCAACAACTGCAACACTTGCAAGAATGTCACAGGCAATTGATGGGTGCACAACTTTCTGGTTTGGGCATTAACGAACTGCAAAATTTGGAAAATCAACTGGAGATGAGTTTAAAGGGTGTCCGAATAAAAAAGAATCAAATATTAACTGATGAGATTAAAGAGCTGCAGCAAAAGGGAAATCAAATCCGTCAAGAAAATGTACAACTCCATAAAAGGATAGACCTCGTTACCAAAGAAAATGTAGAACTACAAAAGATTCATGAAGCGAGGATTATGAATGAAGAAAATGGGAATTCCGATCAATCATACAATATCAGTAACACATATGGTTTACAAGCACCAAACCTTCTGCAGTTGAACCAGCCACGACCTCAGTATACTGAACTCGGATTACAGCTTCTCTAG 696 0.3966 MGRGKIVIKRIDDSTSRQVTFSKRRNGLLKKARELSILCDAQVGVIVFSSTGKLYEYGSSSMKSTIERYNKVKLEHHHHMNPESEVKFWQREVIVLRQQLQHLQECHRQLMGAQLSGLGINELQNLENQLEMSLKGVRIKKNQILTDEIKELQQKGNQIRQENVQLHKRIDLVTKENVELQKIHEARIMNEENGNSDQSYNISNTYGLQAPNLLQLNQPRPQYTELGLQLL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2236 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2236 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2236 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2236 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci11g2236 231 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Prci11g2236 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2236 231 Coils Coil 120 140 - -
Prci11g2236 231 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2236 231 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Prci11g2236 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2236 231 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci11g2236 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g2236 231 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Prci11g2236 231 Coils Coil 142 169 - -
Prci11g2236 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Prci11g2236 231 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2236 Prci-Chr11 22850544 22859090 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2236 1 230 MADS-box Gene Family AT2G14210 60.593 1.59e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci11g2236 K-box 5.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2236 K09264 - gmx:100808145 320.087