Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2234 ATGGGAAGAGGGAAGATTGTGATTAAGAGGATTGACGATTCAACAAGCAGGCAAGTGATTTTCTCAAAGAGAAGAAATGGATTGCTCAAGAAAGCAAGAGAGCTTTCGATTCTCTGCGACGCACAAGTTGGAGTCATTTTGTTCTCCAGCACAGGCAAACTCTATGAATATGGAAGCTCCAGCATGAAATCTCCTATTGAGCGCTACAACAAAGTAAAACTCGAACACCATCAGCATATGAATCCTGAATCGGAAGTCAAGTTTTGGCAGAGAGAATTGATAGTATTGAGGCAACAACTGCAACACTTGCAAGAATGCCAGAGACTAGAGGGTAAAGTGGCTCTTGCGGCTGGAGCAGAAAGTGGGATAGGCGAAGCAACAGTGAGGCTATTCGCTCATCATGGAGCCTTGGTCGTAGCAGCAGATATTCAAGACGAACTTTGCCATGAAGCCGTAGCTTCCATAGCCTCAAACACAGTGACTTATCATCACTGTGATGTGACAGACGAAACCCAGGTGGAAGAAACAGTGAACTTCACTCTGCACAAATATGGAACCCTAGACATCCTCTTCAGTAACGCAGGAATATTAGGTCCCTTGTCCGGCATCCTCGACCTCGATCTCCACGAATTCGACACCAACATGGCCATTAACGTCCGAGGCATGGTTGCGACAATCAAGCACGCTGCTCGTGTTATGGTGGAAAGGAAAATACGAGGATCAATCATATGCACTACGAGCTTGGCTGCTTCCATTGGAGGGTCTGGTCCTCATGCTTATACGACATCCAAGCATGGTCTTCTTGGACTGGTACGATCTGTGTGTGGTGAACTCGGTGAGTATGGGATTCGGGTGAACTGTGTGTCGCCGGCGGCAGTTGCTACGCCTCTTGTGTGTTCGGTGTTTAATGTTAAAGCTCATCAAGTTGAAGATGCGTCTTCGAAGTCTAATCTTAAAGGGGTTGTGTTGAAAGCGAAGCATGTTGCAGAAGCAGCTTTTTTTCTTGCTTCTGATAAGTCTGTTTATATCAGTGGACACAACTTGGTGGAAGAAGGTGGCATCTCTATAGTTAAAAATATTTTTTCTAAGGATTAA 1095 0.4539 MGRGKIVIKRIDDSTSRQVIFSKRRNGLLKKARELSILCDAQVGVILFSSTGKLYEYGSSSMKSPIERYNKVKLEHHQHMNPESEVKFWQRELIVLRQQLQHLQECQRLEGKVALAAGAESGIGEATVRLFAHHGALVVAADIQDELCHEAVASIASNTVTYHHCDVTDETQVEETVNFTLHKYGTLDILFSNAGILGPLSGILDLDLHEFDTNMAINVRGMVATIKHAARVMVERKIRGSIICTTSLAASIGGSGPHAYTTSKHGLLGLVRSVCGELGEYGIRVNCVSPAAVATPLVCSVFNVKAHQVEDASSKSNLKGVVLKAKHVAEAAFFLASDKSVYISGHNLVEEGGISIVKNIFSKD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2234 364 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci11g2234 364 Pfam Enoyl-(Acyl carrier protein) reductase 118 354 - -
Prci11g2234 364 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Prci11g2234 364 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci11g2234 364 PRINTS Glucose/ribitol dehydrogenase family signature 234 250 IPR002347 -
Prci11g2234 364 PRINTS Glucose/ribitol dehydrogenase family signature 113 130 IPR002347 -
Prci11g2234 364 PRINTS Glucose/ribitol dehydrogenase family signature 318 338 IPR002347 -
Prci11g2234 364 PRINTS Glucose/ribitol dehydrogenase family signature 185 196 IPR002347 -
Prci11g2234 364 PRINTS Glucose/ribitol dehydrogenase family signature 260 279 IPR002347 -
Prci11g2234 364 PRINTS Glucose/ribitol dehydrogenase family signature 281 298 IPR002347 -
Prci11g2234 364 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Prci11g2234 364 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 106 359 - -
Prci11g2234 364 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci11g2234 364 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 260 279 IPR002347 -
Prci11g2234 364 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 240 248 IPR002347 -
Prci11g2234 364 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 185 196 IPR002347 -
Prci11g2234 364 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 110 356 IPR036291 -
Prci11g2234 364 FunFam Short-chain dehydrogenase reductase 100 359 - -
Prci11g2234 364 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci11g2234 364 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci11g2234 364 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci11g2234 364 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Prci11g2234 364 Gene3D - 99 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2234 Prci-Chr11 22783925 22791447 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2234 1 108 MADS-box Gene Family AT4G37940 74.074 1.29e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci11g2234 adh_short_C2 1.2e-61 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2234 - - pcin:129286341 715.687