Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2188 ATGAATATCTTTTTTACTATTCCTAAAGCACTTCCAAGATTTTGGCTATTCTTTCTTCTGCTCATCTCTTGTGTTCTCTTACAAGGCTATGGAGATGATGAGTCTGCAAAAGGAGACACTAAAGTTATACGTATTGGTGCAATTATTGATGTTAATTCTCGTATTGGTAAAGAACAGCAACTAGCCATGGAAATTGAAGCTCAAAACTACAATAAGACATCGAAGACTCACAAGCTGGCTCTCTATTTCCAGAACGCCACTAAGGAAGCCTTCAGAGTCACATCTCTCGCTGAAGAGTTAATTGAAATGAAGCAAGTAGAAGTAATTATAGGGATGCATACGTGGCAGGAAGCTGCTCTAGTGGCTGAAATTGGAAGTCAAGCTCAAGTTCCAATCATATCCTTTGCATCACCTGCAATTACCCCGCCATTGACACCGAAACGATGGCCTTATCTGGTAAGGCTAGCGAACAATGTGACTGCACAAGTAAAATGCATTGCAGGCATAGTGAATGCTTTCAGTTGGCAAAGAGTAGTAGTCGTATATGAAGATGACGGCTATGGTGGTGGAGACGACGGGATGTTATCACTCCTTTCTGAGGCCCTCCGAGACTTTGGTTCGCTAATAGAGTACCGTTTAGCTCTTCCACCAATATCTATTTTACCAGATCCAGGAGTGCTAATCAATGAGGAGCTGATTAAGTTGGTAAAGCAAAGTCAGTCTCGTGTTTTCATTGTTTTGCACTCATCCTTAGAAATGGTGACTCATTTTTTCAGAGAAAGTTCAAAGATGGGACTTGTGGATAGAGATTCAGCTTGGATAATCTCAGAGAGCATAACTAATTTGCTTGACTCTCTGGATAAGTCCGTTATTTCCTCCTATATGGGAGGGTCTTTAGGAATCAAGACACACTATTCAGAAAATAGCGGTGAGTATCAAGATTTTCGAGCTCAGTTCAGGAAAAAATTTCGTGCAAAAAATCCAGAGGAAGATAATAGTAACCCAGGATTTTATGCTTTGCAAGCATATGATAGCATCAAAGTTGTCATTCAAGCAGTAGAGAGAATGGAAAGGAACAATAGTAGCAGCACAGAGGCTTTGCTAAGAGAAATATTGTCTAGCAGTTTTCTAGGTCTAAGTGGGGAAATTCATTTTGAAGCAGGTCAGCTCTTGCAGAATCCTATCCTAAGGATGGTAAATGTAGTTGGGAAGAGTTATAAAGAAATAGACTTTTGGACTCAAGAAAATGGGTTCACCGCAAGCCTGCCTACAGGAAAAAGTGAAGAAAATGCTACTGCTAATACACAAAGTTTGGCCGGTGTAGTACAATGGCCAGGGAATTTGCAGAGAACTCCAAAAGGTTGGAATATGCCTATTAAGCGAAACCCATTGAAAATTGCAGTTCCAGGAAGAACTTCATTTTCAAAGTTTGTCAAGGTTGAATATGGAAAAAGTCCAGATCAGAATCAATACAGTGGATTCTGTATTGAGATTTTCAACAAGGTGCTAGAGCTTTTGGAATATGATCTACCCTATGAGTTTTATCCCCTCAATGTAACCTATCCTGATCTCGTTCAACTTGTGTACAACAAGACTTATGATGCAGTGGTTGGTGACATGACCCTACTAGCAGAGAGACTGCAATATGTGGATTTTACTGTGCCATATGCAGAATCAGGATTGTCCATGATAGTTCCAGTGAAGTCTGAAGACTCAACATGGATGTTTCTGAAGCCATTCACCTGGCAAATGTGGGCAGTTACTGGTGCAATCTTGATTTACACAATGTCAGTAGTTTGGTACCTTGAACAAGAACCTAATCCAGAGTTTCAAGGCAATTGGAAGAGACAATTTGGCACTGCTCTTTGGTTTACCTTCTCCTCCTTATTCTTTGCTCATAGGGAGCAAATGCACGGCAACTTATCTCGTGTGGTGATGGGAGCATGGCTTCTTCTAGTTATGGTTCTGACCTCAAGCTACACAGCTAGCCTTTCTTCAATGCTAACAGTTCAACAACTGCAGCCAAATGTTACAAGCATCGAGTGGCTGAAGATGAACAACATGAAAATTGGCTGTGATGGTGACTCGTTTGTTAGAACATACCTCGAGAAAGTTGAAAGGTTCAGCCCAAAAAACATCATCAACATAAGTAGTGAGTACTATTATGATGGTGAATTCAAAAACAATTCAATAGCCGCAGCTTTTCTTGAACTCCCTTATGAGAAAGTGTACATAAGTACATACTGCAAGATGTTCCAAAAAGGATCCCCAGTGGCCAAAGATGTTTCAAAAGCAATATTGCAGCTTTCAGAGAAGGGAGAACTAACCAACTTGGAAGCAAAATGGTTGTATCACTCAAACGAGTGCACCAACAACTCAACCTCCAATGATACACAAAGTCTGAAGCTTGAAAATTTCTGGGTTCTCTTTGTCATTTCTGGGGTCACATCTACCATCTGTTTACTATTTTCTATCATTCAGTCGCAAGGATTTTGTCAGCTAACTCAAAATGGGTCTCGAGAAGGCAATGGACTCACAAGTGATATAACAGTTTGGATAAGAGCAGTTGAATTGGCTAAGCGAGTATATAGCAGAACGCTTATTCAGGAAACTCAGTTGTATGGGCACACAATCGGGGCACAACAAGATTTAACTAACTGCTCTTCCAGATGGGACTACGTCAGCACCACAGATTCAACTATGCATCAACAAGATACTGCATCCCCTGTATCAACAGTTATTGTGCTCTCTTCACCACCGCCAGAGACACCAATGGAAACCCCAGATAATAGATGA 2796 0.4081 MNIFFTIPKALPRFWLFFLLLISCVLLQGYGDDESAKGDTKVIRIGAIIDVNSRIGKEQQLAMEIEAQNYNKTSKTHKLALYFQNATKEAFRVTSLAEELIEMKQVEVIIGMHTWQEAALVAEIGSQAQVPIISFASPAITPPLTPKRWPYLVRLANNVTAQVKCIAGIVNAFSWQRVVVVYEDDGYGGGDDGMLSLLSEALRDFGSLIEYRLALPPISILPDPGVLINEELIKLVKQSQSRVFIVLHSSLEMVTHFFRESSKMGLVDRDSAWIISESITNLLDSLDKSVISSYMGGSLGIKTHYSENSGEYQDFRAQFRKKFRAKNPEEDNSNPGFYALQAYDSIKVVIQAVERMERNNSSSTEALLREILSSSFLGLSGEIHFEAGQLLQNPILRMVNVVGKSYKEIDFWTQENGFTASLPTGKSEENATANTQSLAGVVQWPGNLQRTPKGWNMPIKRNPLKIAVPGRTSFSKFVKVEYGKSPDQNQYSGFCIEIFNKVLELLEYDLPYEFYPLNVTYPDLVQLVYNKTYDAVVGDMTLLAERLQYVDFTVPYAESGLSMIVPVKSEDSTWMFLKPFTWQMWAVTGAILIYTMSVVWYLEQEPNPEFQGNWKRQFGTALWFTFSSLFFAHREQMHGNLSRVVMGAWLLLVMVLTSSYTASLSSMLTVQQLQPNVTSIEWLKMNNMKIGCDGDSFVRTYLEKVERFSPKNIINISSEYYYDGEFKNNSIAAAFLELPYEKVYISTYCKMFQKGSPVAKDVSKAILQLSEKGELTNLEAKWLYHSNECTNNSTSNDTQSLKLENFWVLFVISGVTSTICLLFSIIQSQGFCQLTQNGSREGNGLTSDITVWIRAVELAKRVYSRTLIQETQLYGHTIGAQQDLTNCSSRWDYVSTTDSTMHQQDTASPVSTVIVLSSPPPETPMETPDNR 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2188 931 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 45 826 IPR015683 -
Prci11g2188 931 Pfam Ligand-gated ion channel 784 815 IPR001320 GO:0015276|GO:0016020
Prci11g2188 931 SUPERFAMILY Periplasmic binding protein-like II 438 784 - -
Prci11g2188 931 FunFam Glutamate receptor 463 574 - -
Prci11g2188 931 CDD PBP1_GABAb_receptor_plant 44 422 IPR044440 -
Prci11g2188 931 Pfam Bacterial extracellular solute-binding proteins, family 3 488 783 IPR001638 -
Prci11g2188 931 SMART GluR_14 463 785 IPR001320 GO:0015276|GO:0016020
Prci11g2188 931 FunFam Glutamate receptor 573 711 - -
Prci11g2188 931 SUPERFAMILY Periplasmic binding protein-like I 41 455 IPR028082 -
Prci11g2188 931 Gene3D - 453 572 - -
Prci11g2188 931 FunFam Glutamate receptor 162 333 - -
Prci11g2188 931 CDD GluR_Plant 462 783 - -
Prci11g2188 931 Gene3D - 573 712 - -
Prci11g2188 931 PIRSF IGluLR_plant 9 907 IPR017103 -
Prci11g2188 931 Gene3D - 46 392 - -
Prci11g2188 931 Gene3D - 739 790 - -
Prci11g2188 931 Pfam Receptor family ligand binding region 61 400 IPR001828 -
Prci11g2188 931 Gene3D - 158 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2188 Prci-Chr11 21319408 21324446 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2188 8 822 Ion Channels AT2G29120 32.791 5.57e-141 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2188 - - gmx:100818619 1143.64