Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2187 ATGAATATCTTTTTTACTATTCCTAAAGCACTTCCAAGATTTTGGCTATTCTTTCTTCTGCTCATCTCTTGTGTTCTCTTACAAGGCTATGGAGATGATGAGTCTGCAAAAGGAGACACTAAAGTTATACGTATTGGTGCAATTATTGATGTTAATTCTCGTATTGGTAAAGAACAGCAACTAGCCATGGAAATTGAAGCTCAAAACTACAATAAGACATCGAAGACTCACAAGCTGGCTCTCTATTTCCAGAACGCCACTAAGGAAGCCTTCAGAGTCACATCTCTCGCTGAAGAGTTAATTGAAATGAAGCAAGTAGAAGTAATTATAGGGATGCATACGTGGCAGGAAGCTGCTCTAGTGGCTGAAATTGGAAGTCAAGCTCAAGTTCCAATCATATCCTTTGCATCACCTGCAATTACCCCGCCATTGACACCGAAACGATGGCCTTATCTGGTAAGGCTAGCGAACAATGTGACTGCACAAGTAAAATGCATTGCAGGCATAGTGAATGCTTTCAGTTGGCAAAGAGTAGTAGTCGTATATGAAGATGACGGCTATGGTGGTGGAGACGACGGGATGTTATCACTCCTTTCTGAGGCCCTCCGAGACTTTGGTTCGCTAATAGAGTACCGTTTAGCTCTTCCACCAATATCTATTTTACCAGATCCAGGAGTGCTAATCAATGAGGAGCTGATTAAGTTGGTAAAGCAAAGTCAGTCTCGTGTTTTCATTGTTTTGCACTCATCCTTAGAAATGGTGACTCATTTTTTCAGAGAAAGTTCAAAGATGGGACTTGTGGATAGAGATTCAGCTTGGATAATCTCAGAGAGCATAACTAATTTGCTTGACTCTCTGGATAAGTCCGTTATTTCCTCCTATATGGGAGGGTCTTTAGGAATCAAGACACACTATTCAGAAAATAGCGGTGAGTATCAAGATTTTCGAGCTCAGTTCAGGAAAAAATTTCGTGCAAAAAATCCAGAGGAAGATAATAGTAACCCAGGATTTTATGCTTTGCAAGCATATGATAGCATCAAAGTTGTCATTCAAGCAGTAGAGAGAATGGAAAGGAACAATAGTAGCAGCACAGAGGCTTTGCTAAGAGAAATATTGTCTAGCAGTTTTCTAGGTCTAAGTGGGGAAATTCATTTTGAAGCAGGTCAGCTCTTGCAGAATCCTATCCTAAGGATGGTAAATGTAGTTGGGAAGAGTTATAAAGAAATAGACTTTTGGACTCAAGAAAATGGGTTCACCGCAAGCCTGCCTACAGGAAAAAGTGAAGAAAATGCTACTGCTAATACACAAAGTTTGGCCGGTGTAGTACAATGGCCAGGGAATTTGCAGAGAACTCCAAAAGGTTGGAATATGCCTATTAAGCGAAACCCATTGAAAATTGCAGTTCCAGGAAGAACTTCATTTTCAAAGTTTGTCAAGGTTGAATATGGAAAAAGTCCAGATCAGAATCAATACAGTGGATTCTGTATTGAGATTTTCAACAAGGTGCTAGAGCTTTTGGAATATGATCTACCCTATGAGTTTTATCCCCTCAATGTAACCTATCCTGATCTCGTTCAACTTGTGTACAACAAGACTTATGATGCAGTGGTTGGTGACATGACCCTACTAGCAGAGAGACTGCAATATGTGGATTTTACTGTGCCATATGCAGAATCAGGATTGTCCATGATAGTTCCAGTGAAGTCTGAAGACTCAACATGGATGTTTCTGAAGCCATTCACCTGGCAAATGTGGGCAGTTACTGGTGCAATCTTGATTTACACAATGTCAGTAGTTTGGTACCTTGAACAAGAACCTAATCCAGAGTTTCAAGGCAATTGGAAGAGACAATTTGGCACTGCTCTTTGGTTTACCTTCTCCTCCTTATTCTTTGCTCATAGGGAGCAAATGCACGGCAACTTATCTCGTGTGGTGATGGGAGCATGGCTTCTTCTAGTTATGGTTCTGACCTCAAGCTACACAGCTAGCCTTTCTTCAATGCTAACAGTTCAACAACTGCAGCCAAATGTTACAAGCATCGAGTGGCTGAAGATGAACAACATGAAAATTGGCTGTGATGGTGACTCGTTTGTTAGAACATACCTCGAGAAAGTTGAAAGGTTCAGCCCAAAAAACATCATCAACATAAGTAGTGAGTACTATTATGATGGTGAATTCAAAAACAATTCAATAGCCGCAGCTTTTCTTGAACTCCCTTATGAGAAAGTGTACATAAGTACATACTGCAAGGTATATTCTGGCTCCACACCAACAACCAGATTTGGAGGACTAGGCTTTATGTTCCAAAAAGGATCCCCAGTGGCCAAAGATGTTTCAAAAGCAATATTGCAGCTTTCAGAGAAGGGAGAACTAACCAACTTGGAAGCAAAATGGTTGTATCACTCAAACGAGTGCACCAACAACTCAACCTCCAATGATACACAAAGTCTGAAGCTTGAAAATTTCTGGGTTCTCTTTGTCATTTCTGGGGTCACATCTACCATCTGTTTACTATTTTCTATCATTCAGTCGCAAGGATTTTGTCAGCTAACTCAAAATGGGTCTCGAGAAGGCAATGGACTCACAAGTGATATAACAGTTTGGATAAGAGCAGTTGAATTGGCTAAGCGAGTATATAGCAGAACGCTTATTCAGGAAACTCAGTTGTATGGGCACACAATCGGGGCACAACAAGATTTAACTAACTGCTCTTCCAGATGGGACTACGTCAGCACCACAGATTCAACTATGCATCAACAAGATACTGCATCCCCTGTATCAACAGTTATTGTGCTCTCTTCACCACCGCCAGAGACACCAATGGAAACCCCAGATAATAGATGA 2844 0.4089 MNIFFTIPKALPRFWLFFLLLISCVLLQGYGDDESAKGDTKVIRIGAIIDVNSRIGKEQQLAMEIEAQNYNKTSKTHKLALYFQNATKEAFRVTSLAEELIEMKQVEVIIGMHTWQEAALVAEIGSQAQVPIISFASPAITPPLTPKRWPYLVRLANNVTAQVKCIAGIVNAFSWQRVVVVYEDDGYGGGDDGMLSLLSEALRDFGSLIEYRLALPPISILPDPGVLINEELIKLVKQSQSRVFIVLHSSLEMVTHFFRESSKMGLVDRDSAWIISESITNLLDSLDKSVISSYMGGSLGIKTHYSENSGEYQDFRAQFRKKFRAKNPEEDNSNPGFYALQAYDSIKVVIQAVERMERNNSSSTEALLREILSSSFLGLSGEIHFEAGQLLQNPILRMVNVVGKSYKEIDFWTQENGFTASLPTGKSEENATANTQSLAGVVQWPGNLQRTPKGWNMPIKRNPLKIAVPGRTSFSKFVKVEYGKSPDQNQYSGFCIEIFNKVLELLEYDLPYEFYPLNVTYPDLVQLVYNKTYDAVVGDMTLLAERLQYVDFTVPYAESGLSMIVPVKSEDSTWMFLKPFTWQMWAVTGAILIYTMSVVWYLEQEPNPEFQGNWKRQFGTALWFTFSSLFFAHREQMHGNLSRVVMGAWLLLVMVLTSSYTASLSSMLTVQQLQPNVTSIEWLKMNNMKIGCDGDSFVRTYLEKVERFSPKNIINISSEYYYDGEFKNNSIAAAFLELPYEKVYISTYCKVYSGSTPTTRFGGLGFMFQKGSPVAKDVSKAILQLSEKGELTNLEAKWLYHSNECTNNSTSNDTQSLKLENFWVLFVISGVTSTICLLFSIIQSQGFCQLTQNGSREGNGLTSDITVWIRAVELAKRVYSRTLIQETQLYGHTIGAQQDLTNCSSRWDYVSTTDSTMHQQDTASPVSTVIVLSSPPPETPMETPDNR 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2187 947 Gene3D - 158 416 - -
Prci11g2187 947 CDD GluR_Plant 462 799 - -
Prci11g2187 947 FunFam Glutamate receptor 573 703 - -
Prci11g2187 947 PIRSF IGluLR_plant 9 925 IPR017103 -
Prci11g2187 947 Pfam Ligand-gated ion channel 800 831 IPR001320 GO:0015276|GO:0016020
Prci11g2187 947 CDD PBP1_GABAb_receptor_plant 44 422 IPR044440 -
Prci11g2187 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 45 842 IPR015683 -
Prci11g2187 947 SUPERFAMILY Periplasmic binding protein-like II 438 800 - -
Prci11g2187 947 FunFam Glutamate receptor 463 574 - -
Prci11g2187 947 Gene3D - 573 711 - -
Prci11g2187 947 Gene3D - 725 806 - -
Prci11g2187 947 SUPERFAMILY Periplasmic binding protein-like I 41 455 IPR028082 -
Prci11g2187 947 Gene3D - 453 572 - -
Prci11g2187 947 Pfam Receptor family ligand binding region 61 400 IPR001828 -
Prci11g2187 947 SMART GluR_14 463 801 IPR001320 GO:0015276|GO:0016020
Prci11g2187 947 Gene3D - 46 392 - -
Prci11g2187 947 Pfam Bacterial extracellular solute-binding proteins, family 3 488 799 IPR001638 -
Prci11g2187 947 FunFam Glutamate receptor 162 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2187 Prci-Chr11 21319408 21324446 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2187 8 838 Ion Channels AT2G29120 33.372 3.81e-148 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2187 - - gmx:100818619 1177.54