Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2185 ATGGAAATTGAAGCTCAAAACTACAATAAGACATCGAAGACTCACAAGCTGGCTCTCTATTTCCAGAACGCCACTAAGGAAGCCTTCAGAGTCACATCTCTCGCTGAAGAGTTAATTGAAATGAAGCAAGTAGAAGTAATTATAGGGATGCATACGTGGCAGGAAGCTGCTCTAGTGGCTGAAATTGGAAGTCAAGCTCAAGTTCCAATCATATCCTTTGCATCACCTGCAATTACCCCGCCATTGACACCGAAACGATGGCCTTATCTGGTAAGGCTAGCGAACAATGTGACTGCACAAGTAAAATGCATTGCAGGCATAGTGAATGCTTTCAGTTGGCAAAGAGTAGTAGTCGTATATGAAGATGACGGCTATGGTGGTGGAGACGACGGGATGTTATCACTCCTTTCTGAGGCCCTCCGAGACTTTGGTTCGCTAATAGAGTACCGTTTAGCTCTTCCACCAATATCTATTTTACCAGATCCAGGAGTGCTAATCAATGAGGAGCTGATTAAGTTGGTAAAGCAAAGTCAGTCTCGTGTTTTCATTGTTTTGCACTCATCCTTAGAAATGGTGACTCATTTTTTCAGAGAAAGTTCAAAGATGGGACTTGTGGATAGAGATTCAGCTTGGATAATCTCAGAGAGCATAACTAATTTGCTTGACTCTCTGGATAAGTCCGTTATTTCCTCCTATATGGGAGGGTCTTTAGGAATCAAGACACACTATTCAGAAAATAGCGGTGAGTATCAAGATTTTCGAGCTCAGTTCAGGAAAAAATTTCGTGCAAAAAATCCAGAGGAAGATAATAGTAACCCAGGATTTTATGCTTTGCAAGCATATGATAGCATCAAAGTTGTCATTCAAGCAGTAGAGAGAATGGAAAGGAACAATAGTAGCAGCACAGAGGCTTTGCTAAGAGAAATATTGTCTAGCAGTTTTCTAGGTCTAAGTGGGGAAATTCATTTTGAAGCAGGTCAGCTCTTGCAGAATCCTATCCTAAGGATGGTAAATGTAGTTGGGAAGAGTTATAAAGAAATAGACTTTTGGACTCAAGAAAATGGGTTCACCGCAAGCCTGCCTACAGGAAAAAGTGAAGAAAATGCTACTGCTAATACACAAAGTTTGGCCGGTGTAGTACAATGGCCAGGGAATTTGCAGAGAACTCCAAAAGGTTGGAATATGCCTATTAAGCGAAACCCATTGAAAATTGCAGTTCCAGGAAGAACTTCATTTTCAAAGTTTGTCAAGGTTGAATATGGAAAAAGTCCAGATCAGAATCAATACAGTGGATTCTGTATTGAGATTTTCAACAAGGTGCTAGAGCTTTTGGAATATGATCTACCCTATGAGTTTTATCCCCTCAATGTAACCTATCCTGATCTCGTTCAACTTGTGTACAACAAGACTTATGATGCAGTGGTTGGTGACATGACCCTACTAGCAGAGAGACTGCAATATGTGGATTTTACTGTGCCATATGCAGAATCAGGATTGTCCATGATAGTTCCAGTGAAGTCTGAAGACTCAACATGGATGTTTCTGAAGCCATTCACCTGGCAAATGTGGGCAGTTACTGGTGCAATCTTGATTTACACAATGTCAGTAGTTTGGTACCTTGAACAAGAACCTAATCCAGAGTTTCAAGGCAATTGGAAGAGACAATTTGGCACTGCTCTTTGGTTTACCTTCTCCTCCTTATTCTTTGCTCATAGGGAGCAAATGCACGGCAACTTATCTCGTGTGGTGATGGGAGCATGGCTTCTTCTAGTTATGGTTCTGACCTCAAGCTACACAGCTAGCCTTTCTTCAATGCTAACAGTTCAACAACTGCAGCCAAATGTTACAAGCATCGAGTGGCTGAAGATGAACAACATGAAAATTGGCTGTGATGGTGACTCGTTTGTTAGAACATACCTCGAGAAAGTTGAAAGGTTCAGCCCAAAAAACATCATCAACATAAGTAGTGAGTACTATTATGATGGTGAATTCAAAAACAATTCAATAGCCGCAGCTTTTCTTGAACTCCCTTATGAGAAAGTGTACATAAGTACATACTGCAAGGTATATTCTGGCTCCACACCAACAACCAGATTTGGAGGACTAGGCTTTATGTTCCAAAAAGGATCCCCAGTGGCCAAAGATGTTTCAAAAGCAATATTGCAGCTTTCAGAGAAGGGAGAACTAACCAACTTGGAAGCAAAATGGTTGTATCACTCAAACGAGTGCACCAACAACTCAACCTCCAATGATACACAAAGTCTGAAGCTTGAAAATTTCTGGGTTCTCTTTGTCATTTCTGGGGTCACATCTACCATCTGTTTACTATTTTCTATCATTCAGTCGCAAGGATTTTGTCAGCTAACTCAAAATGGGTCTCGAGAAGGCAATGGACTCACAAGTGATATAACAGTTTGGATAAGAGCAGTTGAATTGGCTAAGCGAGTATATAGCAGAACGCTTATTCAGGAAACTCAGTTGTATGGGCACACAATCGGGGCACAACAAGATTTAACTAACTGCTCTTCCAGATGGGACTACGTCAGCACCACAGATTCAACTATGCATCAACAAGATACTGCATCCCCTGTATCAACAGTTATTGTGCTCTCTTCACCACCGCCAGAGACACCAATGGAAACCCCAGATAATAGATGA 2658 0.4127 MEIEAQNYNKTSKTHKLALYFQNATKEAFRVTSLAEELIEMKQVEVIIGMHTWQEAALVAEIGSQAQVPIISFASPAITPPLTPKRWPYLVRLANNVTAQVKCIAGIVNAFSWQRVVVVYEDDGYGGGDDGMLSLLSEALRDFGSLIEYRLALPPISILPDPGVLINEELIKLVKQSQSRVFIVLHSSLEMVTHFFRESSKMGLVDRDSAWIISESITNLLDSLDKSVISSYMGGSLGIKTHYSENSGEYQDFRAQFRKKFRAKNPEEDNSNPGFYALQAYDSIKVVIQAVERMERNNSSSTEALLREILSSSFLGLSGEIHFEAGQLLQNPILRMVNVVGKSYKEIDFWTQENGFTASLPTGKSEENATANTQSLAGVVQWPGNLQRTPKGWNMPIKRNPLKIAVPGRTSFSKFVKVEYGKSPDQNQYSGFCIEIFNKVLELLEYDLPYEFYPLNVTYPDLVQLVYNKTYDAVVGDMTLLAERLQYVDFTVPYAESGLSMIVPVKSEDSTWMFLKPFTWQMWAVTGAILIYTMSVVWYLEQEPNPEFQGNWKRQFGTALWFTFSSLFFAHREQMHGNLSRVVMGAWLLLVMVLTSSYTASLSSMLTVQQLQPNVTSIEWLKMNNMKIGCDGDSFVRTYLEKVERFSPKNIINISSEYYYDGEFKNNSIAAAFLELPYEKVYISTYCKVYSGSTPTTRFGGLGFMFQKGSPVAKDVSKAILQLSEKGELTNLEAKWLYHSNECTNNSTSNDTQSLKLENFWVLFVISGVTSTICLLFSIIQSQGFCQLTQNGSREGNGLTSDITVWIRAVELAKRVYSRTLIQETQLYGHTIGAQQDLTNCSSRWDYVSTTDSTMHQQDTASPVSTVIVLSSPPPETPMETPDNR 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2185 885 FunFam Glutamate receptor 511 649 - -
Prci11g2185 885 Pfam Receptor family ligand binding region 9 338 IPR001828 -
Prci11g2185 885 PIRSF IGluLR_plant 1 862 IPR017103 -
Prci11g2185 885 CDD PBP1_GABAb_receptor_plant 1 360 IPR044440 -
Prci11g2185 885 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 780 IPR015683 -
Prci11g2185 885 FunFam Glutamate receptor 100 271 - -
Prci11g2185 885 FunFam Glutamate receptor 401 512 - -
Prci11g2185 885 CDD GluR_Plant 400 737 - -
Prci11g2185 885 Gene3D - 8 330 - -
Prci11g2185 885 SMART GluR_14 401 739 IPR001320 GO:0015276|GO:0016020
Prci11g2185 885 Gene3D - 511 649 - -
Prci11g2185 885 Gene3D - 391 510 - -
Prci11g2185 885 Pfam Ligand-gated ion channel 738 769 IPR001320 GO:0015276|GO:0016020
Prci11g2185 885 SUPERFAMILY Periplasmic binding protein-like II 376 738 - -
Prci11g2185 885 Gene3D - 96 354 - -
Prci11g2185 885 Gene3D - 663 744 - -
Prci11g2185 885 Pfam Bacterial extracellular solute-binding proteins, family 3 426 737 IPR001638 -
Prci11g2185 885 SUPERFAMILY Periplasmic binding protein-like I 11 393 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2185 Prci-Chr11 21319184 21324446 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2185 14 776 Ion Channels AT2G29120 34.772 7.54e-144 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2185 - - pcin:129285988 1151.73