Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2171 ATGAGTTTCTCTTTTACTATTCCTAGAACACTTCCAAGATTTTGGCTATTCTCTTTTCTGCTCATCTCGTGTGTTATCTTTCATGGCTATGGAGATGAGTCTACAAAAGGAGACACTGAAGTTATACGTATCGGTGCAATTATTGATGTTAACTCCAGAATTGGTAGAGAGCAGCAAATAGCCATGGAAATTGAAGCTCAAAACTACAACAACACATCAAAGACTCACAAACTGGCTCTCTATTTCCGGAACGCCACCAAGGAAGCCTTCAGAGTCACCTCTCTTGCTGAAGAGTTAATTGGAAAGCAGAAAGTAGAAGTAATTATAGGGATGCATACATGGCAAGAAGCAACTCTAGCGGCTGAAGTTGGAAGCCAAGCTCAAGTTCCAATCATATCCCTTGTCTCACCTGCAATTACCACACCATTGACACAGAAACGATGGCCTTATCTGGTAAGACTAGCTAACAATGTGACTGCACAAGTAAAATGCATTGCAGACATAGTGAATGCTTTCAGTTGGCAAAGAGTAGTAGTCATTCATGAAGATGATGGCTATGGTGGTGGAGACTATGGGATGTTGTCACTCCTTTCTGAGGCCCTCCGAGACTTTGGTTCGGTAATTGAGTACCAGTTAGCTCTTCCACCAATATCAATTTTATCAGATTCAGATTCAAGAGGGCTAATCAATCAAGAGCTGATTAAGTTGGTAAAGCAAACTCAATCTCGTGTTTTCATTGTTTTGCACTCATCCTTGGAAATGGTGACTCATTTGTTCAGAGAAGGTTCAAAGATGGGACTTGTGGATAGAGATTCTGCTTGGATAATCTCAGAGAGCATAACTAATTTGCTTGACTCTGTGGACAAGTCTGTTATTTCCTCCTATATGGGAGGGTCTTTAGGAATCAAGACACACTACTCAGAAAATAGCAGTGAGTATCAAGAATTTCGAGCTCAGTTCAAGAAAAAATTTCACGCAAGGAATCCTGAGGAAGATAACAGCAACCCAGGATTTAATGCTTTGCAAGCATATGATAGCATCAAAGTTGTCATTCAAGCAGTAGAAAGAAAGGCAAGGAACAATAGTAGCAGCGCAAAGGTTTTGCTAAGAGAAATATGGTCTAGCAGTTTTGTAGGTTTAAGTGGGGAAATTCATTTTCAAGCAGGTCAGCTCTTGCAGAATCCTATCCTAAGGTTAGTAAATGCAGTTGGAAAGAGTTATAAAGAAATAGACTTTTGGACTCAAGAATATGGGTTCACTACAGGCCTGCCTACAGGAAAAAGTGAAGAAAATGCTACTGCCAGCGCATTAAGTTTGGCTGGTGTAGTACAATGGCCAGGGAATTTGCATAGAGCTCCAAAAGGTTGGAATATGCCTATTAAGCAAAACCCAATGAGAATTGCAGTTCCAGGAAGAACTTCATTTTCAAAGTTTGTCAAGGTTGACTATGGAAACAGTCCAGATCAGAATAAATACAGTGGATTCTGTATTGAGATTTTCGACAAGGTGCTTGGGCTTTTAGACTATGATCTACCCTATGAGTTTCATCCCCTCAATGTAACTTATCCTGATCTGGTTCAACTTGTGTACAACAAGACTTATGATGCAGTGGTTGGTGACATGACCCTACTAGCAGAGAGACTGCAATACGTGGATTTTACTCTGCCTTATGCAGAATCGGGATTGTCCATGATAGTTCCAATGAAGTCTCAAGAGTCAGCATGGATATTTCTAAAGCCGTTCACCTGGCAAATGTGGGCGGTTACGGGTGCAATCTTGATTTACACAATGTTAGTAGTTTGGTACCTCGAACGAGTACCTAACCCAGAGTTTCGTGGCAACTGGAAGAGACAGTTTAGCACTGCTCTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCAGAGGGAGCAAATGCATGGCAACTTATCTCGTGTGGTGATGGGAGCATGGCTTCTTCTAGTCATGGTTCTGACCTCAAGCTACACAGCTAGTCTTTCTTCAATGTTAACAGTTCAACAGCTGCAGCCAAATGTCACAGGCATTGAGTGGCTGAAGATGAACAACATGAAAATTGGTTGTGATGGTGACTCATTTGTTAGAACATACCTAGAGAAAGTTGAACAGTTCAAGCCAGAAAACATCATCAACATAAGTAATGTTCCAAAAAGGCTCCCCAGTGGCCAAAGATGTTTCTAA 2196 0.4121 MSFSFTIPRTLPRFWLFSFLLISCVIFHGYGDESTKGDTEVIRIGAIIDVNSRIGREQQIAMEIEAQNYNNTSKTHKLALYFRNATKEAFRVTSLAEELIGKQKVEVIIGMHTWQEATLAAEVGSQAQVPIISLVSPAITTPLTQKRWPYLVRLANNVTAQVKCIADIVNAFSWQRVVVIHEDDGYGGGDYGMLSLLSEALRDFGSVIEYQLALPPISILSDSDSRGLINQELIKLVKQTQSRVFIVLHSSLEMVTHLFREGSKMGLVDRDSAWIISESITNLLDSVDKSVISSYMGGSLGIKTHYSENSSEYQEFRAQFKKKFHARNPEEDNSNPGFNALQAYDSIKVVIQAVERKARNNSSSAKVLLREIWSSSFVGLSGEIHFQAGQLLQNPILRLVNAVGKSYKEIDFWTQEYGFTTGLPTGKSEENATASALSLAGVVQWPGNLHRAPKGWNMPIKQNPMRIAVPGRTSFSKFVKVDYGNSPDQNKYSGFCIEIFDKVLGLLDYDLPYEFHPLNVTYPDLVQLVYNKTYDAVVGDMTLLAERLQYVDFTLPYAESGLSMIVPMKSQESAWIFLKPFTWQMWAVTGAILIYTMLVVWYLERVPNPEFRGNWKRQFSTALWFTFSSLFFAQREQMHGNLSRVVMGAWLLLVMVLTSSYTASLSSMLTVQQLQPNVTGIEWLKMNNMKIGCDGDSFVRTYLEKVEQFKPENIINISNVPKRLPSGQRCF 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2171 731 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 715 IPR015683 -
Prci11g2171 731 SUPERFAMILY Periplasmic binding protein-like II 437 709 - -
Prci11g2171 731 SMART GluR_14 466 686 IPR001320 GO:0015276|GO:0016020
Prci11g2171 731 CDD PBP1_GABAb_receptor_plant 43 423 IPR044440 -
Prci11g2171 731 Pfam Receptor family ligand binding region 65 389 IPR001828 -
Prci11g2171 731 FunFam Glutamate receptor 161 334 - -
Prci11g2171 731 Gene3D - 574 714 - -
Prci11g2171 731 Gene3D - 45 393 - -
Prci11g2171 731 Pfam Ligand-gated ion channel 608 697 IPR001320 GO:0015276|GO:0016020
Prci11g2171 731 FunFam Glutamate receptor 464 575 - -
Prci11g2171 731 Gene3D - 456 573 - -
Prci11g2171 731 Gene3D - 157 415 - -
Prci11g2171 731 Pfam Bacterial extracellular solute-binding proteins, family 3 489 607 IPR001638 -
Prci11g2171 731 FunFam Glutamate receptor 574 712 - -
Prci11g2171 731 SUPERFAMILY Periplasmic binding protein-like I 40 456 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2171 Prci-Chr11 21175481 21179382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2171 8 704 Ion Channels AT2G29120 32.138 5.92e-112 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2171 - - gmx:100818619 962.6