Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g2170 ATGAGTTTCTCTTTTACTATTCCTAGAACACTTCCAAGATTTTGGCTATTCTCTTTTCTGCTCATCTCGTGTGTTATCTTTCATGGCTATGGAGATGAGTCTACAAAAGGAGACACTGAAGTTATACGTATCGGTGCAATTATTGATGTTAACTCCAGAATTGGTAGAGAGCAGCAAATAGCCATGGAAATTGAAGCTCAAAACTACAACAACACATCAAAGACTCACAAACTGGCTCTCTATTTCCGGAACGCCACCAAGGAAGCCTTCAGAGTCACCTCTCTTGCTGAAGAGTTAATTGGAAAGCAGAAAGTAGAAGTAATTATAGGGATGCATACATGGCAAGAAGCAACTCTAGCGGCTGAAGTTGGAAGCCAAGCTCAAGTTCCAATCATATCCCTTGTCTCACCTGCAATTACCACACCATTGACACAGAAACGATGGCCTTATCTGGTAAGACTAGCTAACAATGTGACTGCACAAGTAAAATGCATTGCAGACATAGTGAATGCTTTCAGTTGGCAAAGAGTAGTAGTCATTCATGAAGATGATGGCTATGGTGGTGGAGACTATGGGATGTTGTCACTCCTTTCTGAGGCCCTCCGAGACTTTGGTTCGGTAATTGAGTACCAGTTAGCTCTTCCACCAATATCAATTTTATCAGATTCAGATTCAAGAGGGCTAATCAATCAAGAGCTGATTAAGTTGGTAAAGCAAACTCAATCTCGTGTTTTCATTGTTTTGCACTCATCCTTGGAAATGGTGACTCATTTGTTCAGAGAAGGTTCAAAGATGGGACTTGTGGATAGAGATTCTGCTTGGATAATCTCAGAGAGCATAACTAATTTGCTTGACTCTGTGGACAAGTCTGTTATTTCCTCCTATATGGGAGGGTCTTTAGGAATCAAGACACACTACTCAGAAAATAGCAGTGAGTATCAAGAATTTCGAGCTCAGTTCAAGAAAAAATTTCACGCAAGGAATCCTGAGGAAGATAACAGCAACCCAGGATTTAATGCTTTGCAAGCATATGATAGCATCAAAGTTGTCATTCAAGCAGTAGAAAGAAAGGCAAGGAACAATAGTAGCAGCGCAAAGGTTTTGCTAAGAGAAATATGGTCTAGCAGTTTTGTAGGTTTAAGTGGGGAAATTCATTTTCAAGCAGGTCAGCTCTTGCAGAATCCTATCCTAAGGTTAGTAAATGCAGTTGGAAAGAGTTATAAAGAAATAGACTTTTGGACTCAAGAATATGGGTTCACTACAGGCCTGCCTACAGGAAAAAGTGAAGAAAATGCTACTGCCAGCGCATTAAGTTTGGCTGGTGTAGTACAATGGCCAGGGAATTTGCATAGAGCTCCAAAAGGTTGGAATATGCCTATTAAGCAAAACCCAATGAGAATTGCAGTTCCAGGAAGAACTTCATTTTCAAAGTTTGTCAAGGTTGACTATGGAAACAGTCCAGATCAGAATAAATACAGTGGATTCTGTATTGAGATTTTCGACAAGGTGCTTGGGCTTTTAGACTATGATCTACCCTATGAGTTTCATCCCCTCAATGTAACTTATCCTGATCTGGTTCAACTTGTGTACAACAAGACTTATGATGCAGTGGTTGGTGACATGACCCTACTAGCAGAGAGACTGCAATACGTGGATTTTACTCTGCCTTATGCAGAATCGGGATTGTCCATGATAGTTCCAATGAAGTCTCAAGAGTCAGCATGGATATTTCTAAAGCCGTTCACCTGGCAAATGTGGGCGGTTACGGGTGCAATCTTGATTTACACAATGTTAGTAGTTTGGTACCTCGAACGAGTACCTAACCCAGAGTTTCGTGGCAACTGGAAGAGACAGTTTAGCACTGCTCTTTGGTTTACCTTCTCCTCCCTATTCTTTGCTCAGAGGGAGCAAATGCATGGCAACTTATCTCGTGTGGTGATGGGAGCATGGCTTCTTCTAGTCATGGTTCTGACCTCAAGCTACACAGCTAGTCTTTCTTCAATGTTAACAGTTCAACAGCTGCAGCCAAATGTCACAGGCATTGAGTGGCTGAAGATGAACAACATGAAAATTGGTTGTGATGGTGACTCATTTGTTAGAACATACCTAGAGAAAGTTGAACAGTTCAAGCCAGAAAACATCATCAACATAAGTAGTGAGTACCATTATGATGGTGAATTCAAAAACAATTCTATCGCAGTAGCTTTTCTCGAACTCCCTTATGAAAAAGTATACATAAGTACCTACTGCAAGGAATATTCTGGCTCCACACCAACAACTAGATTTGGAGGACTAGGATTTATGTTCCAAAAAGGCTCCCCAGTGGCCAAAGATGTTTCTAAAGCAATATTGCAGCTGTCAGAGGATGGAGAACTAACGAACTTGCAAGCAAAATGGTTATATCAATCAAACGAGTGCATCAGCAACCCAACGTCCAATGATACACACAGTTTGAAGCTTGAAAGTTTCTGGGTTCTCTTTGTCATTTCTGGGGCCACAACAACCATCTGTTCACTATTTTCTATCATTCATTCTCAAAGATTCTGCAGGTAA 2553 0.4093 MSFSFTIPRTLPRFWLFSFLLISCVIFHGYGDESTKGDTEVIRIGAIIDVNSRIGREQQIAMEIEAQNYNNTSKTHKLALYFRNATKEAFRVTSLAEELIGKQKVEVIIGMHTWQEATLAAEVGSQAQVPIISLVSPAITTPLTQKRWPYLVRLANNVTAQVKCIADIVNAFSWQRVVVIHEDDGYGGGDYGMLSLLSEALRDFGSVIEYQLALPPISILSDSDSRGLINQELIKLVKQTQSRVFIVLHSSLEMVTHLFREGSKMGLVDRDSAWIISESITNLLDSVDKSVISSYMGGSLGIKTHYSENSSEYQEFRAQFKKKFHARNPEEDNSNPGFNALQAYDSIKVVIQAVERKARNNSSSAKVLLREIWSSSFVGLSGEIHFQAGQLLQNPILRLVNAVGKSYKEIDFWTQEYGFTTGLPTGKSEENATASALSLAGVVQWPGNLHRAPKGWNMPIKQNPMRIAVPGRTSFSKFVKVDYGNSPDQNKYSGFCIEIFDKVLGLLDYDLPYEFHPLNVTYPDLVQLVYNKTYDAVVGDMTLLAERLQYVDFTLPYAESGLSMIVPMKSQESAWIFLKPFTWQMWAVTGAILIYTMLVVWYLERVPNPEFRGNWKRQFSTALWFTFSSLFFAQREQMHGNLSRVVMGAWLLLVMVLTSSYTASLSSMLTVQQLQPNVTGIEWLKMNNMKIGCDGDSFVRTYLEKVEQFKPENIINISSEYHYDGEFKNNSIAVAFLELPYEKVYISTYCKEYSGSTPTTRFGGLGFMFQKGSPVAKDVSKAILQLSEDGELTNLQAKWLYQSNECISNPTSNDTHSLKLESFWVLFVISGATTTICSLFSIIHSQRFCR 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g2170 850 FunFam Glutamate receptor 161 334 - -
Prci11g2170 850 Pfam Receptor family ligand binding region 65 389 IPR001828 -
Prci11g2170 850 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 843 IPR015683 -
Prci11g2170 850 SMART GluR_14 466 802 IPR001320 GO:0015276|GO:0016020
Prci11g2170 850 Pfam Bacterial extracellular solute-binding proteins, family 3 489 800 IPR001638 -
Prci11g2170 850 PIRSF IGluLR_plant 11 849 IPR017103 -
Prci11g2170 850 FunFam Glutamate receptor 464 575 - -
Prci11g2170 850 Gene3D - 157 415 - -
Prci11g2170 850 SUPERFAMILY Periplasmic binding protein-like I 40 456 IPR028082 -
Prci11g2170 850 CDD PBP1_GABAb_receptor_plant 43 423 IPR044440 -
Prci11g2170 850 SUPERFAMILY Periplasmic binding protein-like II 437 802 - -
Prci11g2170 850 Gene3D - 574 713 - -
Prci11g2170 850 CDD GluR_Plant 463 800 - -
Prci11g2170 850 Gene3D - 456 573 - -
Prci11g2170 850 Gene3D - 45 393 - -
Prci11g2170 850 Gene3D - 715 805 - -
Prci11g2170 850 FunFam Glutamate receptor 574 712 - -
Prci11g2170 850 Pfam Ligand-gated ion channel 801 832 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g2170 Prci-Chr11 21175481 21180072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g2170 8 839 Ion Channels AT2G29120 32.326 8.55e-136 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g2170 - - gmx:100818619 1129.01