Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci11g1999 | ATGGCAATTCATGTCCCTGCACCACTGTCCTCTGGCTTCACCAACCGAACTAAGTATAGATTCGATGTTTTCCTGAGTTTCAGAGGCGAAGATACTCGCCACTCCTTCACTGTCATTCTCTATGATGCTCTTCGCAGGAAGGGAATCAATGCCTTCATTGATGACAAGAAGCTCGGGAAAGGGGAACGGATCTCACCCGCGCTTCTTAGAGCCATAGATAAATCGAGGATTTCGATTATTGTGTTCTCTAGAAACTACGCTACTTCCACGTGGTGCCTGGAGGAACTCGCCCACATCGTTCGTTGTATGAAAGAGAAGAACCAGGTGGTTATGCCCATCTTTTATAAGGTCGATCCGATGGATGTACGGTATCAGAGAAATAGCTTTGGAGAAGCCATGATTGCTCTAGAAGATAGGTTCAGAAACGACATGGAGAAAGTGCACAGATGGAGGTCTGCTTTGTCTGAAGCTGCTAGTTTGTCCATGGCGTGGCTTTTTGATGATGGAAACCAACCTGGGTTCATTGAAAGAATTGCTGAAGATGCATATGCTATGCTACCTCCTAAACGCTTACATAGCATTGATTGCATGGTTGGACTTCAGTCCTGCATAGAAGAAGTGAAGCCATTGCTGGATCAATCTGATGATAGTGTTTGTATGTTGGGGATCTATGGAACTGGTGGAATTGGCAAAACAACCCTTGCCAAGGCTCTGTATAATTCAATCTTCTACCAGTTTGATGGTGCAAGCTTTCTATTCGATGTCAGAGAAGCTTCAAAGCAATATCGAGGCATAATTCGTCTCCAACAGACACTTCTTTCTGAGATTCTTGAGGAGAAGAGGATGAAGTTGGGCAGTGTTGATGAAGGAATATCTAAAATAATACACAGACTCTCTTGCAAAAGAATTCTTTTGGTTCTTGATGATGTTGATGAGGTAGAACAATTAGAACTGCTAGCAGGAAGCTGTCATTGGTTTGGTCCTGGTAGCAAGATCATTATAACAACAAGAAATATACAATTGCTAACTGCACATCGTGTTGAAACATATGAAATGAAGAATTTAAATGACCATGACTCTCTTGAGCTGTTTTGTTGGCATGCTTTTCACATGAGGCAGCCTCCTAAAGCCTATGAAGATATGTCTATTCATGTGATCGATTATGCACAAGGCCTCCCTTTGGCTTTGAGGGTAATAGGCTCCAATTTGGCTTCTAAAAGCTTAGATGAATGGAGATCGACGATGGAACAATATGAGAGGATCCCAGAAAGGACAATTCATGAGGTGCTAAAGATAAGCTATGATTGCTTGCAGGACAATGCCAAATGTATTTTCCTGGATATTGCTTGTTTCTTTAAGAAAAGGAGATTGGAATATGTTGAAGAAATACTAGACGCATGTGATTTTGGTGCAAGGTTCTATATTGAAGTTCTTGTTGATAAATCTCTTGTAACTATTAACGACAGTGGCTCCTTGTGGATGCATGATCTAATGCAAGAGATGGGTAGAGAGATTGTTAGGCAGGAAGCACCCTTAAATCCTAGCCAACGTAGCAGATTATGGTATCATGAAGATGTTATTAGAGTACTATCTGAAAATTCAGGAAGCAGCAAAATTGAAGGAATAATGCTTTGGCCCCCTCAACAAGAAGAAGTGGAGTGGACTGGCCATGCCTTTGAGAAGATGGAGAATCTTAGGATTCTCATTGTTCGAAATGCACGCTTTACAACTGGTCCTAAACACTTACCAAACAACTTAAGAGTGCTCGATTGGGAGGGATACCCTTCTATGACTTTACCACGGGATTTTTATCCTCTGAAAATTGTTGTTTTGAGGTTATGTCGTAGTCATGTCAGACTCGGAGAGCCGTTCATGAGGTTTGAATATGTGACAAACATGTATTTCTCACAGTGTGAGTTTATAACTGAAGTACCTGATATGTCACAAGTCCCAAATTTAAGAGAATTGATATTTAGAGACTGTTGCAATTTGATCAAGGTTCATCATTCTGTGGGTTCTCTCTCTAAGCTGGTTCAGTTAGATGTTAGTGGCTGCACCAAACTTAATAGCTTTCCTCATGAAATCAAGATGGCATCTCTCAAATCCCTTGACCTCAGTAATTGCAAGAGTCTTGACTACTTCCCTAATATAGTGGGAAAGATGGGTGCGTTAAGGACCATTCTTGCAGAAAACACTGCCATCAATGAACTGCCAGATTCCATTGGAAATCTTTCAGGTCTTCAGCTTTTAGATATGAACTCCTGTAAAAGTCTTAGGGAGCTTCCGATCAGCTTATTCAAATTGCAAAGCCTTAGCTGGCTTCTGTTAGGAGACAGTAGACCTCGTTGCAAAAGATCACTCAAGATATTAATGCAAGAGAGCTACCCAATTATGAGATGTACAAACTTAGAGATCTTGAATCTCGAAAATTGTTGTCTATCAGACGAAGATCTTCACCTAACTCTGAATCGTTTTCAAAATTTGCAAGAATTAATTCTATCAGGGAATGATATTGTGGCCCTTCCTGAGTGCATTAAAGAGTGTGCTAATCTATTGAAACTGGAGGTGACTAATTGCAAGCAGCTAAGATATGTACCTGAGTTTTCATCTAAGTTGATGATCATAGAGGCTGACCATTGTACATCATTAACTACAGAATCTTCATGCCGATTATGGTCTCAGGTTAGGAAGGAGGTCAATGGCCTGTTAATCAATATGCCCGCATCAGCATTTCCAGATTGGTTTGATCATTGCTACAAAGGAGGGACCTTGTCTTTTCGTGCTCGTGGGAACTTCCCTCGTGTTGCCATAGCAATTGAGTTGCGCAATGTGAATGCAAGTGTCCCATCAAAATCTAAGGGGGAACTAGAAATCAATGTTAAACCTTGGAAGTACATCTCTGGTTGTATTAGCATCAATGGTCGTAAAGTAGAAGGGGGAAGAGAGGCAAAGAATAACTTGGTGCAGCAACCAGTTAGAGAAGGTCATGTGGCATTGTTTGATCTAAGTCAGCATTTTGGGGAAAAGGGGTGCAAGATCCATGATGGCTTTATGGAACGAGACTGGAATGATGTGGAAATAGAATTCAAATGTGGATCTCCAAATTTGTCCATTGTTAACTGTGGAATTTATGTGTACAAACAGCAAACAAACGTGGAGAATGTCCAGTTCAAGTCTTCTCTGCTTTCCATTAATGCTCCAAGAACTTTATTGAAACGGAAAGCTATAGCTTCTCCTTCTTATGAATCAACCAAAAAGTTCACGAGGAACTTCAAGACTACTGATAAACCAAAGCTACATAACCTAAAAACAAGGACAATGCGGGAGGAGAGCTAA | 3336 | 0.4092 | MAIHVPAPLSSGFTNRTKYRFDVFLSFRGEDTRHSFTVILYDALRRKGINAFIDDKKLGKGERISPALLRAIDKSRISIIVFSRNYATSTWCLEELAHIVRCMKEKNQVVMPIFYKVDPMDVRYQRNSFGEAMIALEDRFRNDMEKVHRWRSALSEAASLSMAWLFDDGNQPGFIERIAEDAYAMLPPKRLHSIDCMVGLQSCIEEVKPLLDQSDDSVCMLGIYGTGGIGKTTLAKALYNSIFYQFDGASFLFDVREASKQYRGIIRLQQTLLSEILEEKRMKLGSVDEGISKIIHRLSCKRILLVLDDVDEVEQLELLAGSCHWFGPGSKIIITTRNIQLLTAHRVETYEMKNLNDHDSLELFCWHAFHMRQPPKAYEDMSIHVIDYAQGLPLALRVIGSNLASKSLDEWRSTMEQYERIPERTIHEVLKISYDCLQDNAKCIFLDIACFFKKRRLEYVEEILDACDFGARFYIEVLVDKSLVTINDSGSLWMHDLMQEMGREIVRQEAPLNPSQRSRLWYHEDVIRVLSENSGSSKIEGIMLWPPQQEEVEWTGHAFEKMENLRILIVRNARFTTGPKHLPNNLRVLDWEGYPSMTLPRDFYPLKIVVLRLCRSHVRLGEPFMRFEYVTNMYFSQCEFITEVPDMSQVPNLRELIFRDCCNLIKVHHSVGSLSKLVQLDVSGCTKLNSFPHEIKMASLKSLDLSNCKSLDYFPNIVGKMGALRTILAENTAINELPDSIGNLSGLQLLDMNSCKSLRELPISLFKLQSLSWLLLGDSRPRCKRSLKILMQESYPIMRCTNLEILNLENCCLSDEDLHLTLNRFQNLQELILSGNDIVALPECIKECANLLKLEVTNCKQLRYVPEFSSKLMIIEADHCTSLTTESSCRLWSQVRKEVNGLLINMPASAFPDWFDHCYKGGTLSFRARGNFPRVAIAIELRNVNASVPSKSKGELEINVKPWKYISGCISINGRKVEGGREAKNNLVQQPVREGHVALFDLSQHFGEKGCKIHDGFMERDWNDVEIEFKCGSPNLSIVNCGIYVYKQQTNVENVQFKSSLLSINAPRTLLKRKAIASPSYESTKKFTRNFKTTDKPKLHNLKTRTMREES | 1111 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci11g1999 | 1111 | SMART | till_3 | 20 | 160 | IPR000157 | GO:0007165 | |
| Prci11g1999 | 1111 | PRINTS | Disease resistance protein signature | 389 | 403 | - | - | |
| Prci11g1999 | 1111 | PRINTS | Disease resistance protein signature | 297 | 311 | - | - | |
| Prci11g1999 | 1111 | PRINTS | Disease resistance protein signature | 220 | 235 | - | - | |
| Prci11g1999 | 1111 | PRINTS | Disease resistance protein signature | 695 | 711 | - | - | |
| Prci11g1999 | 1111 | Gene3D | - | 191 | 351 | IPR027417 | - | |
| Prci11g1999 | 1111 | Gene3D | - | 354 | 438 | IPR042197 | - | |
| Prci11g1999 | 1111 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 16 | 160 | IPR035897 | - | |
| Prci11g1999 | 1111 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 17 | 187 | - | - | |
| Prci11g1999 | 1111 | ProSiteProfiles | TIR domain profile. | 19 | 186 | IPR000157 | GO:0007165 | |
| Prci11g1999 | 1111 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 190 | 448 | IPR027417 | - | |
| Prci11g1999 | 1111 | SUPERFAMILY | L domain-like | 493 | 883 | - | - | |
| Prci11g1999 | 1111 | Gene3D | Ribonuclease Inhibitor | 724 | 894 | IPR032675 | - | |
| Prci11g1999 | 1111 | ProSiteProfiles | NACHT-NTPase domain profile. | 219 | 313 | IPR007111 | - | |
| Prci11g1999 | 1111 | Gene3D | - | 15 | 190 | IPR035897 | - | |
| Prci11g1999 | 1111 | Pfam | NB-ARC domain | 203 | 423 | IPR002182 | GO:0043531 | |
| Prci11g1999 | 1111 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 22 | 764 | IPR044974 | GO:0006952 | |
| Prci11g1999 | 1111 | Gene3D | Ribonuclease Inhibitor | 552 | 723 | IPR032675 | - | |
| Prci11g1999 | 1111 | Pfam | TIR domain | 21 | 181 | IPR000157 | GO:0007165 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci11g1999 | Prci-Chr11 | 17300498 | 17305565 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci11g1999 | 21 | 875 | WRKY Transcription Factor Family | AT4G12020 | 30.259 | 3.27e-91 | 320 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci11g1999 | - | - | pcin:129284776 | 1289.25 |