LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g1987	ATGGCGGTTCAAGTGGCAGCACCTTCAAGCCTCAGCTTCACCAGCGAAACAGAGTACAGATATGATGTTTTCCTGAGCTTCAGAGGCAAAGATACTCGCCATTCCTTCACTGTGATTCTCTACGATGCTTTGCGCCGGAAAGGAATCAACGCCTTCATCGATGACAAGAAGCTCGGGAAAGGAGAACGGATCGCACCTTCTCTTCTTAAGGCCATAGAGAGATCCAGGGTTTCAATTGTTGTGTTCTCTACCAACTATGCTACTTCAACGTGGTGCCTGGATGAACTGGCCCACATCATTCGATGTAAGAAGGAGAAGAACCACATGGTTATGCCTATCTTTTACAAGGTGGATCCCATGGATGTTCAGTATCAGAGGAATAGCTTTGGCGAAGCCATGGCTGCTCATGAAGATAGGTTCAGAAATGACCTAGAGAAAGTACAAAAATGGAGGTCTGCTTTGTCTGAAACTGCTAGTTTGTCATCAGCATGGCTTTTTGGAGATGGATACGAATTTGGTTTTATTCAAAGGATCGTTGAAGAAGCATATTCTATGCTACCTCCTAAACGCCTCCATAACACTGATCATATGGTTGGACTTGAGCCTCGTAAAGAAGAAGTGACGTCACTTTTAGATGAATGTGATGATGGTGTTTGTATGTTGGGGATTCATGGAACTGGTGGAGTTGGCAAAACAACCCTTGCGAGGGCTGTCTATAATTCAATCTTTTACCAATTTGAAGGTGCATGCTTTTTATTTGATGTCAAAGAAGCATCAAAGAAATACCAGGGCATTGTTTGTCTTCAACAAACGCTTCTATCAGAGACTCTTGAGGAAAAGAGAGTGAAGTTTGGGAGTGCTGACGAAGGAATATCAAGAATAAAACATAGACTCTCTCACAAAAGAGTGCTGCTGGTTCTTGATGACGTTGATGAGGTTGAACAGTTGGAAAAGCTTGCAGGAGGATGTGACTGGTTTGGTTGGGGAAGCAAAGTCATCATAACGACAAGAAATCAGCAATTGCTAATTGCGTGTAATGTTGAAAAAACATATGAAATGAAGGAACTAGATGATCATGACTCTCTTGAACTCTTTTGTTGGCATGCATTCCATATGAGCCAACCTCCAGAAGGCTATCATGACATGTCTTGTCATGTTGTGATAAGTTATGCACGAGGCCTTCCTTTGGCTTTAAGACTGATTGGTGCCAATTTGGCGCACAAAAACTTGGAGGAATGGAGGTCTACATTGAAACAATATGATTGTATCTTGGAAAGATCAATTCATGAAGTATTAAAGATAAGCTACCATTGCCTTCAAGATGGGGCAAAGAGTATTTTCCTAGATATAGCTTGTTTCTTTGGAATGTATTTATGGGATTCTGTTGAAGAAATAGTTGAAGCTTGTGATTCTGGGGGATGGTTTTATATTGAGGTGCTTGTTGATAAATCTTTGATATCTATTGATGATAAGGGTCACTTGTACATGCATGGTTTGATAAAACAAATGGGCAGAGAGATTGTGAGGAATGAGGCACCATTAGATCCTTGCAAACGCAGTAGATTATGGTATTATAAAGATGTTCTTAAAGTTTTATGTGAAAATTTGGGAAGTAGTAATATTGAAGGAATAATGCTTGATCCGCCTCAACAAGAAGATGTGAAGTGGAGCAGTTTATCCTTTGAAAAGATGACTAATCTTAGAATTCTTATCATTCGGAAATCTCAATTTTCAACCAGTCCTAAACATCTTCCCAATAGTTTAAAATGGCTTGAGTGGGAGGGATATCCTTCTTCAACTTTACCACTTGATTTTTCTCCGAGGAAACTAGTTTTCTTCAAGTTATGTTGTAGTCCTTTCAGGCTGGATCAGCCACTGAAGAGGTTTGAATTTGTGACATATATGAATTTCTCACAATGTGAATTCATAACAGAAATACCTGAGATGTCTCAATTCCAAAGTTTAACAAGATTGCTGTTTAAAGACTGTTGCAACTTGATCAAAGTTCATGATTCGGTGGGATCTCTCTCTATGCTGATGACATTAAATGTTCGTGGATGTATCAAACTCACAGGCTTTCCACGTGAAATCAAGATGCCATCTCTTCAAAGTCTTGATCTCAGTAATTGTAAGAGTCTTGATTACTTCCCACGTGTAGCGGGAAATATGGATGCCCTAAAGTGTATTTCGGCAAATGAGACCGCTATTAAAGAGCTCCCACCTTGCATTGGAAATCTTCCAAGCCTTGAATTACTAAATATAAGGTCCTGCAAAAGTCTTAGGGATCTTCCAAACAGCTTATTAGCCTTGAAAAATATTAACTTCCTTATTCTGGAAGGCACTCAACGTCGCAGCAGAAAATCTTTGAAGAAACTAATGCATGAGAGACCAGAAGTTGTTAGATTTAGTGCAAACTTGGAATTCTTGAATCTAAGCTATTGTGGTCTATTGGATGAAGATCTTCACCTAACTCTGAATATATTTCAGAATTTGGAGCAGTTAAATCTATCAGGAAATAATGATCTTGTGTCGCTTCCTGGGTGCATTAAAGAATGTGCTAAGTTGGTGTTCTTGACACTGAATAACTGCAAGAGATTAAGACACATACCAGAGCTGCCATTGCATTTGAACGTTCAAGCAGAGAATTGCACATCATTAACTAACGAGTCATCAGGCCATATATGGTCTCAGGCGAAGAACGAGTTCTTTGGCATGGGCATCACAATGCCAGCAACAACAACAGCATTTCCTGATTGGTTCCACAATTGGTGTGAAGGAGGGAAATTGTGTTTTCGTGCTCGCGGGTCGAATTTCCCTCATATTCTCCTTTGA	2832	0.3997	MAVQVAAPSSLSFTSETEYRYDVFLSFRGKDTRHSFTVILYDALRRKGINAFIDDKKLGKGERIAPSLLKAIERSRVSIVVFSTNYATSTWCLDELAHIIRCKKEKNHMVMPIFYKVDPMDVQYQRNSFGEAMAAHEDRFRNDLEKVQKWRSALSETASLSSAWLFGDGYEFGFIQRIVEEAYSMLPPKRLHNTDHMVGLEPRKEEVTSLLDECDDGVCMLGIHGTGGVGKTTLARAVYNSIFYQFEGACFLFDVKEASKKYQGIVCLQQTLLSETLEEKRVKFGSADEGISRIKHRLSHKRVLLVLDDVDEVEQLEKLAGGCDWFGWGSKVIITTRNQQLLIACNVEKTYEMKELDDHDSLELFCWHAFHMSQPPEGYHDMSCHVVISYARGLPLALRLIGANLAHKNLEEWRSTLKQYDCILERSIHEVLKISYHCLQDGAKSIFLDIACFFGMYLWDSVEEIVEACDSGGWFYIEVLVDKSLISIDDKGHLYMHGLIKQMGREIVRNEAPLDPCKRSRLWYYKDVLKVLCENLGSSNIEGIMLDPPQQEDVKWSSLSFEKMTNLRILIIRKSQFSTSPKHLPNSLKWLEWEGYPSSTLPLDFSPRKLVFFKLCCSPFRLDQPLKRFEFVTYMNFSQCEFITEIPEMSQFQSLTRLLFKDCCNLIKVHDSVGSLSMLMTLNVRGCIKLTGFPREIKMPSLQSLDLSNCKSLDYFPRVAGNMDALKCISANETAIKELPPCIGNLPSLELLNIRSCKSLRDLPNSLLALKNINFLILEGTQRRSRKSLKKLMHERPEVVRFSANLEFLNLSYCGLLDEDLHLTLNIFQNLEQLNLSGNNDLVSLPGCIKECAKLVFLTLNNCKRLRHIPELPLHLNVQAENCTSLTNESSGHIWSQAKNEFFGMGITMPATTTAFPDWFHNWCEGGKLCFRARGSNFPHILL	943

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g1987	943	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	767	IPR044974	GO:0006952
	Prci11g1987	943	SUPERFAMILY	L domain-like	545	870	-	-
	Prci11g1987	943	Gene3D	Ribonuclease Inhibitor	728	889	IPR032675	-
	Prci11g1987	943	Gene3D	-	355	440	IPR042197	-
	Prci11g1987	943	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	187	-	-
	Prci11g1987	943	Pfam	NB-ARC domain	204	420	IPR002182	GO:0043531
	Prci11g1987	943	ProSiteProfiles	TIR domain profile.	19	186	IPR000157	GO:0007165
	Prci11g1987	943	Gene3D	-	15	189	IPR035897	-
	Prci11g1987	943	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	450	IPR027417	-
	Prci11g1987	943	Pfam	TIR domain	21	162	IPR000157	GO:0007165
	Prci11g1987	943	SUPERFAMILY	"Winged helix" DNA-binding domain	427	532	IPR036390	-
	Prci11g1987	943	SMART	till_3	20	160	IPR000157	GO:0007165
	Prci11g1987	943	Gene3D	Ribonuclease Inhibitor	553	727	IPR032675	-
	Prci11g1987	943	PRINTS	Disease resistance protein signature	297	311	-	-
	Prci11g1987	943	PRINTS	Disease resistance protein signature	391	405	-	-
	Prci11g1987	943	PRINTS	Disease resistance protein signature	697	713	-	-
	Prci11g1987	943	PRINTS	Disease resistance protein signature	220	235	-	-
	Prci11g1987	943	Gene3D	-	190	353	IPR027417	-
	Prci11g1987	943	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	160	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g1987	Prci-Chr11	17193443	17198795	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g1987	21	812	WRKY Transcription Factor Family	AT4G12020	30.873	2.37e-86	302

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g1987	-		-	pcin:129286217	1903.26