LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g1983	ATGGCGATTCAAGCCCCAGTAACATTATCTTCTGATGGCTTTACCAGCGAAACCAAGTATAGATTCGACGTATTTCTGAGTTTCAGAGGCGAAGATACTCGCCACTCCTTCACTGTGATTCTCTACGATGCTTTGCGTCGGAAGGGAATCAACGTCTTCATCGACGACAAGAAGCTCGGGAAAGGAGAACAGATCGCACCTACGCTACTTAAAGCCATTGAGAAGTCAAGGATTTCGATTATTGTGTTCTCTACAAACTACGGTACTTCCACATGGTGCCTTGATGAACTTGCCCATATCATCCGGTGTAAGAAGGAGAAGAACCAGGTGGTTATGCCCATCTTCTACAAGGTGAATCCCATGGAAGTTCAGTATCAGAGAAATAACTTTGGAGAAGCCATGGCTGCTCATGAAGAAAGGTTCAGCAATGACATGGAGAAAGTGCAAACATGGAGGTCTGCTTTGTCTGAAGCTGCGAGTTTGTCATCAGCATGGCTTTACGAAGATGGATACGAATTTGGGTTTATTGAAAGGATTGTTGAAGATACATATGCTAGGTTGCCTCCTAAACGCTTCCATAACATTGATTACATTGTTGGACTTGAGCCTCACATAGAAGAAGTGAAGTCACATTTGGATGAAACTGATAATAGTGTTTGTATGTTGGGAATCTATGGAACTGGTGGAATTGGCAAAACAACCCTTGCAAAAGCTATCTACAATTCAATCTTCTACCAATTTGAAGGTGCATGTTTTTTGTTTGATGTCAGAGAAGAATCAACAAAATACAACGGTCTTCTTCGCCTTCAACAAACACTTATATCAGAAATTCTTGAGGAAAAGAGGATGAAGTTTCACAGTGTTGAGAAAGGAAAATCTATTATCAAACATAGACTTTCTAACAAAAAGGTATTGTTGGTTCTTGATGATGTTGAAGAAGTTGAACAGTTGGAAAACCTTGCAGGGGCATGTGATTGGTTTGGTCGTGGAAGCAAAATCATTATAACAACAAGGAACAAGCAATTGCTAATTGTGCGCAATATTAAAAAAACATCTGAAATGAAGGAGCTAAATGAGCGTGACTCTCTTAAACTCTTTTGTTGGCATGCCTTTCGTACAAGCCAACCTCCAAAAGGCTACAGAAATATGTCCATTGGTGTTATAAATTATGCACATGGCCTTCCTCTTGCTTTAAAATTAGTAGGCTCCACTTTGGCACATAAAAACTTAGAGGAATGGATATCTACATTGAAAAGATATAATAAAGTCCCAGGAAGAACAATACATGAAGTAATGAAGGTAAGTTATGACTGCTTACAAGACAGTGCTAAGTGTATTTTCCTAGACATTGCTTGCTTCTTTAACAGGAAGGAATTGGAATTTGTTGAAGAAATACTAAAAGCCTGTTATTGTGGGGCAAGGTTCTATATTGAAGTTCTTGTTGATAAATCTCTGATAATGGTTGATGATAATGGTTGCTTGCACATGCATGATTTAATACAACAAATGGGTAAAGAAATCGTTTGGCGTGAGGCGCCTTCAGATCCTAGTAAACGCAGCAGGTTATGGTATTATGAAGATGTTCTTTATGTACTGCGTAAAAATTTAGGAGGCAATAATATTGAAGGAATATTACTTGATCCACCTCAACAAGAAGAAGTGAAGTGGAATGGTTTAGCCCTTAAGAAGATGATTAATCTAAGGATTCTCTTCATTCGAAATACCCAATTTTCAAGGAGTCCTAAATATCTTCCCAATAGTTTAAGATTACTTGATTGGGAGGGATATCCTTCTACGACTTTACCACTAGATTTTTCTCCTCCAAAACTTGTTTGCTTCAAGTTATATGGAAGTATTTTCCAATTGAAAGAGCCATTCCAGAAGTTTGAATATATGACATATATGGATTTCTCAAAGTGCGAATTCATAACTGAAGTACCTGATATGTCCCGATTTCAAAATCTAAAAACATTGACCTTTCTTAGATGTCGCAATCTGATTAAAGTTCATGATTCTGTGGGATCTCTCTGTAAGCTGGTCCGATTAAATGTTGGAGAATGCACCAAACTTAAAATCTTTCCACGTGAAATCAACATGGCATCTCTTCAAGTTCTTAATCTCACAAGTTGCAAGAATCTTCATTACTTTCCACGTATAGTGGGAAACATGGATGCATTGAAACATATCTCAGCAGATAAAACTGCCATCAAAGAGCTTCCATCTTCCATTGGAAATCTTTCTGGGCTCGAATATTTATCTGTAAGGTTCTGCAAAAGTCTTAGAGAGCTTCCAAGCAGCTTATTCAAGTTGGAAAATCTTGAGAACCTTGATTTGGCCGGCATTCAACGTCCTGGAAAAAAATATATGAAGAAATTAGTGAAAGAGAGCCAATCCTCAGTTATTTGTTGTACGAACCTTGAGAACTTGTGTCTCGAAGATTGTGGTCTGTTGGATGAAGATCTTCATGTAATTCTGGCATGTTTTCGGAACGTTCAAAACATAGATCTATCCAAGAATTATTTTGCGACCCTTCCTGAGTGCACTAAAGAGTGTACTTACTTGAAGAAACTAGAAGTGAATAATTGTAAAAGGCTAAGAGACATACCAGAGCTGCCATCACAATTGCGTAACATAAAGGCTGAGAATTGCACATCATTATCAATGGAGTCATCAGGCCATTTATGGTCTCAGGCTAAAAAATGCTTTCTCGGAGTAATCGGTATGCCAGCAACAAAATTCCCTGATTGGTTCGATTATTGCTGTCAAGGAAGGACATTGTCTTTCCGAGTTCATGGGAAAAATTTCCCTCGTCTTGTAGTCGCAGTTGAATCAGACAAAGCGAAGGCGAGTCACAGATACTTCTTCGAAGTTTTCATGAGAATCAATGATCGTAAAATGCCGTGGATACAAAGTTATGCGTCCTTTTATGGGTCTGATGCAATTAGAGATGGTGTTGTGTTGATTTTTTCTGGTGACCAAGGTCATGTGTTCTTGTTTGATTTGCTTCAGAATCTTGGTGAAGAAGATTGGGAGGGGCTTAACAAGTCTTTGGATTTGGATTGGAATGATGTGGATGTACATGTTATATGTCACCCACCTGATATCTCCATAGTTAAGTGTGGAGCTTATGTGGACAAGCAACGAACAAACATGGAGAATATTCGCTTCGTGTCTCCAAGACTTTCCATAAAGGTTTCAACAATTTCACCGCTGAAACGAAAAGCTATATCTTCTGCTCTTAATGAATCAGCCAGGAAGCTCTTGAGAAATTTCAAGGCTGCTGATAAAGGAGAAGTCAATACCACAAAAAAAAGGTCAAGGCCAGTCAGCCTGGGAAGAAAACGACACCAAGTTATTCGCTCGTGGTACAAGAGGCATTTTCCAATGCGCAAGCAATTTTGGAGATTTCTGAAAACATGGATTCATAATGTCTGGAACTTGATTCTCCGGTGGACGGTGCAGAAGATGATGCCTCAGGTGATTCGGATTCGGAAGAAATATTGTTTCAAAGTTGAGCAAATTGACAGCGATGACTGA	3537	0.3893	MAIQAPVTLSSDGFTSETKYRFDVFLSFRGEDTRHSFTVILYDALRRKGINVFIDDKKLGKGEQIAPTLLKAIEKSRISIIVFSTNYGTSTWCLDELAHIIRCKKEKNQVVMPIFYKVNPMEVQYQRNNFGEAMAAHEERFSNDMEKVQTWRSALSEAASLSSAWLYEDGYEFGFIERIVEDTYARLPPKRFHNIDYIVGLEPHIEEVKSHLDETDNSVCMLGIYGTGGIGKTTLAKAIYNSIFYQFEGACFLFDVREESTKYNGLLRLQQTLISEILEEKRMKFHSVEKGKSIIKHRLSNKKVLLVLDDVEEVEQLENLAGACDWFGRGSKIIITTRNKQLLIVRNIKKTSEMKELNERDSLKLFCWHAFRTSQPPKGYRNMSIGVINYAHGLPLALKLVGSTLAHKNLEEWISTLKRYNKVPGRTIHEVMKVSYDCLQDSAKCIFLDIACFFNRKELEFVEEILKACYCGARFYIEVLVDKSLIMVDDNGCLHMHDLIQQMGKEIVWREAPSDPSKRSRLWYYEDVLYVLRKNLGGNNIEGILLDPPQQEEVKWNGLALKKMINLRILFIRNTQFSRSPKYLPNSLRLLDWEGYPSTTLPLDFSPPKLVCFKLYGSIFQLKEPFQKFEYMTYMDFSKCEFITEVPDMSRFQNLKTLTFLRCRNLIKVHDSVGSLCKLVRLNVGECTKLKIFPREINMASLQVLNLTSCKNLHYFPRIVGNMDALKHISADKTAIKELPSSIGNLSGLEYLSVRFCKSLRELPSSLFKLENLENLDLAGIQRPGKKYMKKLVKESQSSVICCTNLENLCLEDCGLLDEDLHVILACFRNVQNIDLSKNYFATLPECTKECTYLKKLEVNNCKRLRDIPELPSQLRNIKAENCTSLSMESSGHLWSQAKKCFLGVIGMPATKFPDWFDYCCQGRTLSFRVHGKNFPRLVVAVESDKAKASHRYFFEVFMRINDRKMPWIQSYASFYGSDAIRDGVVLIFSGDQGHVFLFDLLQNLGEEDWEGLNKSLDLDWNDVDVHVICHPPDISIVKCGAYVDKQRTNMENIRFVSPRLSIKVSTISPLKRKAISSALNESARKLLRNFKAADKGEVNTTKKRSRPVSLGRKRHQVIRSWYKRHFPMRKQFWRFLKTWIHNVWNLILRWTVQKMMPQVIRIRKKYCFKVEQIDSDD	1178

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g1983	1178	Gene3D	Ribonuclease Inhibitor	535	724	IPR032675	-
	Prci11g1983	1178	Pfam	NB-ARC domain	202	426	IPR002182	GO:0043531
	Prci11g1983	1178	SUPERFAMILY	"Winged helix" DNA-binding domain	427	532	IPR036390	-
	Prci11g1983	1178	PRINTS	Disease resistance protein signature	391	405	-	-
	Prci11g1983	1178	PRINTS	Disease resistance protein signature	221	236	-	-
	Prci11g1983	1178	PRINTS	Disease resistance protein signature	697	713	-	-
	Prci11g1983	1178	PRINTS	Disease resistance protein signature	298	312	-	-
	Prci11g1983	1178	Gene3D	-	356	440	IPR042197	-
	Prci11g1983	1178	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	450	IPR027417	-
	Prci11g1983	1178	Gene3D	Ribonuclease Inhibitor	725	899	IPR032675	-
	Prci11g1983	1178	Pfam	TIR domain	22	181	IPR000157	GO:0007165
	Prci11g1983	1178	ProSiteProfiles	TIR domain profile.	20	187	IPR000157	GO:0007165
	Prci11g1983	1178	Gene3D	-	16	189	IPR035897	-
	Prci11g1983	1178	Gene3D	-	190	351	IPR027417	-
	Prci11g1983	1178	SMART	till_3	21	161	IPR000157	GO:0007165
	Prci11g1983	1178	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	23	766	IPR044974	GO:0006952
	Prci11g1983	1178	SUPERFAMILY	Toll/Interleukin receptor TIR domain	16	161	IPR035897	-
	Prci11g1983	1178	FunFam	Disease resistance protein (TIR-NBS-LRR class)	18	188	-	-
	Prci11g1983	1178	SUPERFAMILY	L domain-like	511	892	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g1983	Prci-Chr11	17142170	17148910	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g1983	14	780	WRKY Transcription Factor Family	AT4G12020	31.338	8.72e-91	320

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g1983	-		-	pcin:129284776	2345.85