Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci11g1982 | ATGGCGATTCAAGCCCCAGTAACATTATCTTCTGATGGCTTTACCAGCGAAACCAAGTATAGATTCGACGTATTTCTGAGTTTCAGAGGCGAAGATACTCGCCACTCCTTCACTGTGATTCTCTACGATGCTTTGCGTCGGAAGGGAATCAACGTCTTCATCGACGACAAGAAGCTCGGGAAAGGAGAACAGATCGCACCTACGCTACTTAAAGCCATTGAGAAGTCAAGGATTTCGATTATTGTGTTCTCTACAAACTACGGTACTTCCACATGGTGCCTTGATGAACTTGCCCATATCATCCGGTGTAAGAAGGAGAAGAACCAGGTGGTTATGCCCATCTTCTACAAGGTGAATCCCATGGAAGTTCAGTATCAGAGAAATAACTTTGGAGAAGCCATGGCTGCTCATGAAGAAAGGTTCAGCAATGACATGGAGAAAGTGCAAACATGGAGGTCTGCTTTGTCTGAAGCTGCGAGTTTGTCATCAGCATGGCTTTACGAAGATGGATACGAATTTGGGTTTATTGAAAGGATTGTTGAAGATACATATGCTAGGTTGCCTCCTAAACGCTTCCATAACATTGATTACATTGTTGGACTTGAGCCTCACATAGAAGAAGTGAAGTCACATTTGGATGAAACTGATAATAGTGTTTGTATGTTGGGAATCTATGGAACTGGTGGAATTGGCAAAACAACCCTTGCAAAAGCTATCTACAATTCAATCTTCTACCAATTTGAAGGTGCATGTTTTTTGTTTGATGTCAGAGAAGAATCAACAAAATACAACGGTCTTCTTCGCCTTCAACAAACACTTATATCAGAAATTCTTGAGGAAAAGAGGATGAAGTTTCACAGTGTTGAGAAAGGAAAATCTATTATCAAACATAGACTTTCTAACAAAAAGGTATTGTTGGTTCTTGATGATGTTGAAGAAGTTGAACAGTTGGAAAACCTTGCAGGGGCATGTGATTGGTTTGGTCGTGGAAGCAAAATCATTATAACAACAAGGAACAAGCAATTGCTAATTGTGCGCAATATTAAAAAAACATCTGAAATGAAGGAGCTAAATGAGCGTGACTCTCTTAAACTCTTTTGTTGGCATGCCTTTCGTACAAGCCAACCTCCAAAAGGCTACAGAAATATGTCCATTGGTGTTATAAATTATGCACATGGCCTTCCTCTTGCTTTAAAATTAGTAGGCTCCACTTTGGCACATAAAAACTTAGAGGAATGGATATCTACATTGAAAAGATATAATAAAGTCCCAGGAAGAACAATACATGAAGTAATGAAGGTAAGTTATGACTGCTTACAAGACAGTGCTAAGTGTATTTTCCTAGACATTGCTTGCTTCTTTAACAGGAAGGAATTGGAATTTGTTGAAGAAATACTAAAAGCCTGTTATTGTGGGGCAAGGTTCTATATTGAAGTTCTTGTTGATAAATCTCTGATAATGGTTGATGATAATGGTTGCTTGCACATGCATGATTTAATACAACAAATGGGTAAAGAAATCGTTTGGCGTGAGGCGCCTTCAGATCCTAGTAAACGCAGCAGGTTATGGTATTATGAAGATGTTCTTTATGTACTGCGTAAAAATTTAGGAGGCAATAATATTGAAGGAATATTACTTGATCCACCTCAACAAGAAGAAGTGAAGTGGAATGGTTTAGCCCTTAAGAAGATGATTAATCTAAGGATTCTCTTCATTCGAAATACCCAATTTTCAAGGAGTCCTAAATATCTTCCCAATAGTTTAAGATTACTTGATTGGGAGGGATATCCTTCTACGACTTTACCACTAGATTTTTCTCCTCCAAAACTTGTTTGCTTCAAGTTATATGGAAGTATTTTCCAATTGAAAGAGCCATTCCAGAAGTTTGAATATATGACATATATGGATTTCTCAAAGTGCGAATTCATAACTGAAGTACCTGATATGTCCCGATTTCAAAATCTAAAAACATTGACCTTTCTTAGATGTCGCAATCTGATTAAAGTTCATGATTCTGTGGGATCTCTCTGTAAGCTGGTCCGATTAAATGTTGGAGAATGCACCAAACTTAAAATCTTTCCACGTGAAATCAACATGGCATCTCTTCAAGTTCTTAATCTCACAAGTTGCAAGAATCTTCATTACTTTCCACGTATAGTGGGAAACATGGATGCATTGAAACATATCTCAGCAGATAAAACTGCCATCAAAGAGCTTCCATCTTCCATTGGAAATCTTTCTGGGCTCGAATATTTATCTGTAAGGTTCTGCAAAAGTCTTAGAGAGCTTCCAAGCAGCTTATTCAAGTTGGAAAATCTTGAGAACCTTGATTTGGCCGGCATTCAACGTCCTGGAAAAAAATATATGAAGAAATTAGTGAAAGAGAGCCAATCCTCAGTTATTTGTTGTACGAACCTTGAGAACTTGTGTCTCGAAGATTGTGGTCTGTTGGATGAAGATCTTCATGTAATTCTGGCATGTTTTCGGAACGTTCAAAACATAGATCTATCCAAGAATTATTTTGCGACCCTTCCTGAGTGCACTAAAGAGTGTACTTACTTGAAGAAACTAGAAGTGAATAATTGTAAAAGGCTAAGAGACATACCAGAGCTGCCATCACAATTGCGTAACATAAAGGCTGAGAATTGCACATCATTATCAATGGAGTCATCAGGCCATTTATGGTCTCAGGCTAAAAAATGCTTTCTCGGAGTAATCGGTATGCCAGCAACAAAATTCCCTGATTGGTTCGATTATTGCTGTCAAGGAAGGACATTGTCTTTCCGAGTTCATGGGAAAAATTTCCCTCGTCTTGTAGTCGCAGTTGAATCAGACAAAGCGAAGAATCTTGGTGAAGAAGATTGGGAGGGGCTTAACAAGTCTTTGGATTTGGATTGGAATGATGTGGATGTACATGTTATATGTCACCCACCTGATATCTCCATAGTTAAGTGTGGAGCTTATGTGGACAAGCAACGAACAAACATGGAGAATATTCGCTTCGTGTCTCCAAGACTTTCCATAAAGGTTTCAACAATTTCACCGCTGAAACGAAAAGCTATATCTTCTGCTCTTAATGAATCAGCCAGGAAGCTCTTGAGAAATTTCAAGGCTGCTGATAAAGGAGAAGTCAATACCACAAAAAAAAGGTCAAGGCCAGTCAGCCTGGGAAGAAAACGACACCAAGTTATTCGCTCGTGGTACAAGAGGCATTTTCCAATGCGCAAGCAATTTTGGAGATTTCTGAAAACATGGATTCATAATGTCTGGAACTTGATTCTCCGGTGGACGGTGCAGAAGATGATGCCTCAGGTGATTCGGATTCGGAAGAAATATTGTTTCAAAGTTGAGCAAATTGACAGCGATGACTGA | 3372 | 0.3891 | MAIQAPVTLSSDGFTSETKYRFDVFLSFRGEDTRHSFTVILYDALRRKGINVFIDDKKLGKGEQIAPTLLKAIEKSRISIIVFSTNYGTSTWCLDELAHIIRCKKEKNQVVMPIFYKVNPMEVQYQRNNFGEAMAAHEERFSNDMEKVQTWRSALSEAASLSSAWLYEDGYEFGFIERIVEDTYARLPPKRFHNIDYIVGLEPHIEEVKSHLDETDNSVCMLGIYGTGGIGKTTLAKAIYNSIFYQFEGACFLFDVREESTKYNGLLRLQQTLISEILEEKRMKFHSVEKGKSIIKHRLSNKKVLLVLDDVEEVEQLENLAGACDWFGRGSKIIITTRNKQLLIVRNIKKTSEMKELNERDSLKLFCWHAFRTSQPPKGYRNMSIGVINYAHGLPLALKLVGSTLAHKNLEEWISTLKRYNKVPGRTIHEVMKVSYDCLQDSAKCIFLDIACFFNRKELEFVEEILKACYCGARFYIEVLVDKSLIMVDDNGCLHMHDLIQQMGKEIVWREAPSDPSKRSRLWYYEDVLYVLRKNLGGNNIEGILLDPPQQEEVKWNGLALKKMINLRILFIRNTQFSRSPKYLPNSLRLLDWEGYPSTTLPLDFSPPKLVCFKLYGSIFQLKEPFQKFEYMTYMDFSKCEFITEVPDMSRFQNLKTLTFLRCRNLIKVHDSVGSLCKLVRLNVGECTKLKIFPREINMASLQVLNLTSCKNLHYFPRIVGNMDALKHISADKTAIKELPSSIGNLSGLEYLSVRFCKSLRELPSSLFKLENLENLDLAGIQRPGKKYMKKLVKESQSSVICCTNLENLCLEDCGLLDEDLHVILACFRNVQNIDLSKNYFATLPECTKECTYLKKLEVNNCKRLRDIPELPSQLRNIKAENCTSLSMESSGHLWSQAKKCFLGVIGMPATKFPDWFDYCCQGRTLSFRVHGKNFPRLVVAVESDKAKNLGEEDWEGLNKSLDLDWNDVDVHVICHPPDISIVKCGAYVDKQRTNMENIRFVSPRLSIKVSTISPLKRKAISSALNESARKLLRNFKAADKGEVNTTKKRSRPVSLGRKRHQVIRSWYKRHFPMRKQFWRFLKTWIHNVWNLILRWTVQKMMPQVIRIRKKYCFKVEQIDSDD | 1123 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci11g1982 | 1123 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 16 | 161 | IPR035897 | - | |
| Prci11g1982 | 1123 | Gene3D | Ribonuclease Inhibitor | 725 | 970 | IPR032675 | - | |
| Prci11g1982 | 1123 | Gene3D | - | 16 | 189 | IPR035897 | - | |
| Prci11g1982 | 1123 | PRINTS | Disease resistance protein signature | 697 | 713 | - | - | |
| Prci11g1982 | 1123 | PRINTS | Disease resistance protein signature | 391 | 405 | - | - | |
| Prci11g1982 | 1123 | PRINTS | Disease resistance protein signature | 298 | 312 | - | - | |
| Prci11g1982 | 1123 | PRINTS | Disease resistance protein signature | 221 | 236 | - | - | |
| Prci11g1982 | 1123 | Pfam | TIR domain | 22 | 181 | IPR000157 | GO:0007165 | |
| Prci11g1982 | 1123 | Gene3D | - | 190 | 351 | IPR027417 | - | |
| Prci11g1982 | 1123 | Gene3D | Ribonuclease Inhibitor | 535 | 724 | IPR032675 | - | |
| Prci11g1982 | 1123 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 23 | 766 | IPR044974 | GO:0006952 | |
| Prci11g1982 | 1123 | ProSiteProfiles | TIR domain profile. | 20 | 187 | IPR000157 | GO:0007165 | |
| Prci11g1982 | 1123 | Pfam | NB-ARC domain | 202 | 426 | IPR002182 | GO:0043531 | |
| Prci11g1982 | 1123 | SMART | till_3 | 21 | 161 | IPR000157 | GO:0007165 | |
| Prci11g1982 | 1123 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 18 | 188 | - | - | |
| Prci11g1982 | 1123 | SUPERFAMILY | "Winged helix" DNA-binding domain | 427 | 532 | IPR036390 | - | |
| Prci11g1982 | 1123 | SUPERFAMILY | L domain-like | 511 | 892 | - | - | |
| Prci11g1982 | 1123 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 188 | 450 | IPR027417 | - | |
| Prci11g1982 | 1123 | Gene3D | - | 356 | 440 | IPR042197 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci11g1982 | Prci-Chr11 | 17142170 | 17148911 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci11g1982 | 14 | 780 | WRKY Transcription Factor Family | AT4G12020 | 31.338 | 4.35e-91 | 320 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci11g1982 | - | - | pcin:129284776 | 2160.19 |