LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g1980	ATGGCGATTCCAGTGGCCTCACCTTCTTCATCCTTCAGCTTCACTAGCGAAACCAAGTTTAGATATGAATATGATGTTTTTCTGAGTTTCAGAGGCGAGGATACTCGCCGCTCCTTCACTGAAATTCTCTACGATGCTTTGCGACGTAAGGGAATCAACGCCTTCATTGATGACAAGAAGCTTGGAAAAGGGGAAGAGATCTCTCCTACGCTTCTCAAAGCCATAGAGAGGTCCAGAATTTCCATTATTGTCTTCTCTACCAATTACGCTACTTCTACATGGTGCCTAGACGAACTCGCCCACATCGTCCGGTGTATGAAGGAGAAGAAGCAGGTGGTGATGCCCATCTTTTACAAGGTGGATCCGATGGATGTTCAGTATCAGAGAAATAGCTTTGAGGAAGCCGTGGCTGCTCTTGAAGATAGATTCAGCGATGACCTGGAGAAAGTGCGAAAATGGAGGTCTGCTTTGTCTGAAGCTGCTAGCTTGTCGTCAGCATGGCTTTTTGATGATGGGTACGAGCTTGGATTCATTGAAAGGATTGTCGAAGATGCGTATGCCGTGCTACCACCTAAGCGCTGCCATAAAACTGATCATATAGTTGGACTTGAGCCTCGTATTGAGGAGATAATGTTACTTCTGAACAGATCTGATGATCGGGTTTGTATGTTGGGGATTCATGGAACTGGTGGGGTTGGCAAAACAACGATTGCAAAAGCCATCTATAATTCGATCTTCTACCAATTTGAAGGCTCGTGTTTTTTGTTTGATGTCAAAGAAACATCAAACAAGTATCAGGGCATTGTTCGCCTTCAACAGACACTTTTATCAGAGATTCTTGAAGAGAAGAGGATGAAGTTTGGTAGTGTTGATGAAGGAATATCAAACATAAAACACAGACTCTCTGGCAAAAAGGTTTTGTTGGTTCTTGACGATGTTGATGAGGTTGAACAATTAGAACAACTCGCTGGCAGTTGCGATTGGTTTGGATCTGGAAGCAAGATCATTATAACAACAAGAAATAAGCAATTACTAATAGCATGTAATGTTAAAAGAACATATGAAATGAAGGAGCTAAATTACCTTCACTCCATTGAACTTTTTTGCTGGTATGCCTTTGGTTTGAGCCAACCTAAGAGACGCTATAAAGGCATGTCAATTCATGTTATAAGGTATGTGCATGGTCTTCCTCTGGCTTTAAAATTAATAGGCTCCAATTTGGCAAATAAAAGCATTGAGGAATGGAGATCTATATTGAAGCAATATGATGAGATCCAAGAGAGAACTATTAATCATGTACTTAAGATAAGCTATGATTGCTTACAAGACGGTGCGAAGCGTATATTTTTAGATATTGCTTGTTTCTTTAAAGAGAAGAAATTGGAATTTGTTGAAGCAATACTAGAAGCTTGTCATTGTGGGGCAAGGTTTTATATTGAAGTTCTTGTTGACAAATCTCTGATAACTATTCTTGATCATGGTTACTTGTACATGCATGATCTAATTCAACATATGGGCAGAGACATTGCTAAAGAAGAAGCACCATGTGATCCTAGTGAATGCAGCAGATTATGGTATCACAAAGATGTTCTCAAAGTACTGCGTGAAAACTTAGGAGGAAATAATATTGAAGGAATAGTTCTTGATCCACCTCAACAAGAAGAAGTGGAGTGGAGTGGTTTAGCCTTTGAGAAGATGAATAATCTTAGAATTCTTATTGTTCGCAATACCAAATTTTCAGCAAGCCCTAAATATCTTCCAAATAGTTTAGTATTACTTGATTGGCAGGAATATCCTTCCATGACTTTACCACGTGATTTTTGTCCTCCAAAACTAATTTGCTTCAAGATATACGGAAGCCCTTTTAGATGGGAGGAACCACTCAAGCTTGAATATGTGACATATATGGATTTCTCGAAGTGTGAATTCATAACAGAAGTACCTGAGTTGTCTCGATTTCAAAATTTGAAAGAATTGAGCTTTAGTGAATGTCACAATCTGATCAAAGTCCATGATTCAGTAGGATCTCTCCGTAAGCTTGTCGAATTAGACGTTAGCAAATGCATCAAACTTGCAAGCTTTCCACATGAAATCAAGATGCCATCTCTTGAAGTTCTTAATCTCATTGATTGCCAGAGTCTTGACTACTTCCCACACATTGTGGGAAACATGGAACCATTGATGTGTATTCTTGCAGATGGTAGTGCTATTAATGAGCTCCCATCTTCCATTGGAAATCTTCCAAGGCTTGAGGTTTTGAGTTTAACATCCTGCAAAAGTCTTAGGAAGCTTCCAAACAGCTTATTGACATTGCATAATCTTAAAGGGCTTAAATTAGGAGGTCTGAAACTTCATGGGAGAAAATCTTTGAAGAAATTATTGCAAGAGAACCAACCACCAATTATGAGCTGCTCGAAGTTAGATCGCTTGGATCTCCATGATTGTGGTTTGTTGGATGAAGATCTTCACCTACCTCTGAAATGTTTTAAGCATGTGAAAGACTTGATTCTATCATGGAACGATTTTGTGTCACTTCCTGAGTGTATTAAAGAGTGTGTTCACTTGATGAACCTAGAAGTGAATAACTGCAAGAGACTCAGAGATATTCCAGAGCTTCCATCAAGATTAGGGGACATAAGGGCAGAGAATTGCACATCATTAACTATGGAGTCTTCGGGCCGTTTATGGTCTCAGGCCATAAAGTCCAATCGCGTGACCATCTCGATGCCAGCAACAGCATATCCTGACTGGTTCGACCATCGCTGTCAAGGAGGGATGTTGTCTTTTCGTGTTCATGGCAGAAATTTCCCTCGTGTTGTCATCGCATTTGAGACAGGGAAGGCTAACAGAAATAAGACATGCTACTTTGATGTCTTTATGATCATCAATGGCAGTAGCAAAATGCCATGGATGCAAATTGATTTTCCAATTCTAGGTGAAGGAGGTCGTGTTTTGGTTTCTTATACTGAACAAGGTCATGTGTTTTTCTCTGATCTCCTCGGCGAATTTACAGAAGAAGAGTTAGGGGGGCTTAATAAATTTCTGGAATTGGATTGGAATGACGTGGAAATTCAAGTTACATGTGACTCAGATGATATAGACATAGTTAACTGTGGAGTTTATGTCGACAAGAAGCAAACAAACATGAAGAATGTCCAGTTCAAGTCTTCTAGAACTTCACAGAAACGAAGAGCGATAGCTTCTCTTCCTTCTGAACCACCCAAGAAGCTCCTGAGAAAGTTCAAGACTACTTCCAAAAGAAATATCAACAACACAAAGAAAAGGACAAGGAGAACTAAACCACAGCATTTTCATCCGTGGTACAGGAGGAGAAAGATGTTTTTTCCAATGGGTAAGAATCCCTTGAGGTTTGTGTATCATTATTAG	3387	0.3977	MAIPVASPSSSFSFTSETKFRYEYDVFLSFRGEDTRRSFTEILYDALRRKGINAFIDDKKLGKGEEISPTLLKAIERSRISIIVFSTNYATSTWCLDELAHIVRCMKEKKQVVMPIFYKVDPMDVQYQRNSFEEAVAALEDRFSDDLEKVRKWRSALSEAASLSSAWLFDDGYELGFIERIVEDAYAVLPPKRCHKTDHIVGLEPRIEEIMLLLNRSDDRVCMLGIHGTGGVGKTTIAKAIYNSIFYQFEGSCFLFDVKETSNKYQGIVRLQQTLLSEILEEKRMKFGSVDEGISNIKHRLSGKKVLLVLDDVDEVEQLEQLAGSCDWFGSGSKIIITTRNKQLLIACNVKRTYEMKELNYLHSIELFCWYAFGLSQPKRRYKGMSIHVIRYVHGLPLALKLIGSNLANKSIEEWRSILKQYDEIQERTINHVLKISYDCLQDGAKRIFLDIACFFKEKKLEFVEAILEACHCGARFYIEVLVDKSLITILDHGYLYMHDLIQHMGRDIAKEEAPCDPSECSRLWYHKDVLKVLRENLGGNNIEGIVLDPPQQEEVEWSGLAFEKMNNLRILIVRNTKFSASPKYLPNSLVLLDWQEYPSMTLPRDFCPPKLICFKIYGSPFRWEEPLKLEYVTYMDFSKCEFITEVPELSRFQNLKELSFSECHNLIKVHDSVGSLRKLVELDVSKCIKLASFPHEIKMPSLEVLNLIDCQSLDYFPHIVGNMEPLMCILADGSAINELPSSIGNLPRLEVLSLTSCKSLRKLPNSLLTLHNLKGLKLGGLKLHGRKSLKKLLQENQPPIMSCSKLDRLDLHDCGLLDEDLHLPLKCFKHVKDLILSWNDFVSLPECIKECVHLMNLEVNNCKRLRDIPELPSRLGDIRAENCTSLTMESSGRLWSQAIKSNRVTISMPATAYPDWFDHRCQGGMLSFRVHGRNFPRVVIAFETGKANRNKTCYFDVFMIINGSSKMPWMQIDFPILGEGGRVLVSYTEQGHVFFSDLLGEFTEEELGGLNKFLELDWNDVEIQVTCDSDDIDIVNCGVYVDKKQTNMKNVQFKSSRTSQKRRAIASLPSEPPKKLLRKFKTTSKRNINNTKKRTRRTKPQHFHPWYRRRKMFFPMGKNPLRFVYHY	1128

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g1980	1128	PRINTS	Disease resistance protein signature	223	238	-	-
	Prci11g1980	1128	PRINTS	Disease resistance protein signature	745	761	-	-
	Prci11g1980	1128	PRINTS	Disease resistance protein signature	393	407	-	-
	Prci11g1980	1128	PRINTS	Disease resistance protein signature	300	314	-	-
	Prci11g1980	1128	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	163	IPR035897	-
	Prci11g1980	1128	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	24	768	IPR044974	GO:0006952
	Prci11g1980	1128	SUPERFAMILY	"Winged helix" DNA-binding domain	430	534	IPR036390	-
	Prci11g1980	1128	FunFam	Disease resistance protein (TIR-NBS-LRR class)	21	190	-	-
	Prci11g1980	1128	Gene3D	Ribonuclease Inhibitor	731	893	IPR032675	-
	Prci11g1980	1128	ProSiteProfiles	TIR domain profile.	22	189	IPR000157	GO:0007165
	Prci11g1980	1128	Pfam	NB-ARC domain	206	433	IPR002182	GO:0043531
	Prci11g1980	1128	SUPERFAMILY	L domain-like	548	892	-	-
	Prci11g1980	1128	Pfam	TIR domain	24	169	IPR000157	GO:0007165
	Prci11g1980	1128	Gene3D	Ribonuclease Inhibitor	531	730	IPR032675	-
	Prci11g1980	1128	Gene3D	-	359	442	IPR042197	-
	Prci11g1980	1128	SMART	till_3	23	163	IPR000157	GO:0007165
	Prci11g1980	1128	Gene3D	-	192	354	IPR027417	-
	Prci11g1980	1128	Gene3D	-	18	191	IPR035897	-
	Prci11g1980	1128	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	195	452	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g1980	Prci-Chr11	17126286	17132973	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g1980	23	781	WRKY Transcription Factor Family	AT4G12020	31.538	5.72e-91	320

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g1980	-		-	pcin:129284776	1440.63