LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g1973	ATGGCGATTCAAGTGCCAGCAATATCATCCCTTGGCTTCACCAGCAAAACGAAGTACAGATACGATGTTTTCTTGAGTTTCAGAGGCGAAGATACTCGCCACTCCTTCACTGAGATTCTCTACAATGCTTTGCGCCGGAAGGGAATCAACGCCTTCATTGACGACAAGAAGCTCGGCAAAGGGGAAGAGATCTCACCTACGCTTCTTAAAGCCATAGAGAGATCCAGGATTTCCATTATTGTGTTCTCTACCAACTACGCTACTTCCACATGGTGCCTTGATGAACTTGCCCATATCATTCGGTGTAAGAAGGAGAAGAACCAGCTGGTAATGCCCATCTTCTACAAGGTGGATCCCATGGATGTTCGGTTTCAGAGAAATAGCTTTGGAGAAGCCATGGCTGCTCATGAAGTTGGTAGGTTCAAGAATGAAGCGGAGAAAGTGTGCAAGTGGAGGTCTGCGTTGTATGAAGCTGCTAGTTTGTCATCTGCATGGCTTTTTGGAGAGGGAAACAAAGTTGGGTTTATTGAAAGGATTGTTGAAGAAGCATATTCTATGCTACCTCCTAAACGCTTCCATAATACTGATCACTTGGTTGGACTTGAGCCTCGCGTAGAGGAGTTGATGTCAATCATAAATAAATCTGATGATCTTGTTTGTATGTTGGGGATTTATGGAACTGGTGGAATTGGCAAGACAACCCTTTCAAAAGCTTTATATAATTCAATCTTCCACAAATTTGATGGTGCATGTTTTTTGTTTGATGTTCGGGAAGAATCGAATAAATATCAAGGTATTATTCATCTTCAACAGACACTTTTATCTGAGGTTCTTGAGGAAAAGAGGATGAAGTTTAGTAGTGCTGATGAAGGAATATCAAACATAAAACACAGGCTCTCTCACAAGAATGTTTTGTTGGTTCTTGACGATGTTGATGAGGTTGAACAATTAGAACAACTTGCCGGAGGGTGTGATTGGTTTGGTCGTGGAAGCAAGATAATTGTAACGACAAGAAATAAGCAATTGCTGATTGCATGTAATGTTAAAAACACATACGAAATGAAGAAGCTAAATGAGGACGACTCTCTTGAGCTCTTTTGTTCGCATGCATTTCGAATGAGCCAACCTCCAAAGGGCTATGAAAATATGTCTGCTCGTGTCATAAGATATGTACGTGGTCTTCCTCTGGCATTAAAATTAGTAGGCTCCAATTTGACACATAAAAACTTAGAGGAATGGAGATCTACATTGGAACGGTATGAGAGAATCCAAGAAAGAACAATCCATGAGGTACTAAAGATAAGCTATGATTGCTTACAAGACGCTGCCAAACGTATTTTTCTAGATATTGCTTGTTTCTTTAAATATGAGATATTGGAATTTGTTGAAGACATACTGGAAGCCTGTCAACATGGGGCAAGGTTTTATATTGAAGTTCTTGTCGATAAATCTTTGATAAATATTGATGATAATAATGGTTTCTTGTACATGCACGACCTAATACAACAAATGGGCAAAGAAGTTGTCAGGCAAGAGGCATCAAGTCCTGGTGAACGCAGTAGATTATGGCATTACAAAGATGTTGTTCAAGTATTATGTGAAAATTTAGGAAGCAGTAATATTGAAGGAATAATACTCAATCCGCCTCAACAAGAAAAAGTGGAATGGGATGGTTTAGCCTTTGAGAAGATGAATAATCTCAAGATTCTCATTGTTCGAAATGCCCAATTTTCAACGAGTCCTAAATGCTTTCCCAATAGTTTGAGATTACTTGACTGGAAAGGATATCCTTCTGCAACTTTACCACCAGATTTTTCTCCTTCAAGACTTGTTTGCTTCAAGTTATATGGAAGTCTTTTCACATTGGAAGAACCATTCAAGAAGTTTGAATATGTAACAGACATGGATTTCTCACTATGTGAATTGATAACTGAAGTACCTGATTTGTCACAATTTCAAAGTTTAAAGACACTGAGCTTTCGTGAATGTCACAATCTGATCAAAGTTCATGACTCGGTGGGATGTCTCTCTAAGCTTGAAAGATTAGATGTTAGTGAATGCACCAAATTGACACGCTTTCCGCGTGAAATCAACATGACATCTCTTCAAGAGCTTGATCTCAGTCATTGCAAGAGTCTTGATTACTTCCCAAGCATTGTAGGAAAGATGGAATATCTAATGCAAATTTTGCCAGAAGACACTGCTATTACAGAGCTCCCACCTTCCATTGGAAATCTTCCGGAACTTGATCGTTTAGTTTTAAGCTCTTGCACATATCTTAGAGAGCTTCCAATTAGCTTATTGAAGTTGGAATATCTTAAGGAGCTTGAGTTGTCAGGCACTCAACATGCTTGTATAATATCTCTGATCACAGTAATGCAACAGAGCCAACCAGTTGGTTTTAGCTGCTCAAACTTAGAGAACTTGGATCTCGCGAATTGTGGTCTGTTAGATGAAGATCTTCACGTGATTCTGACATGTTTTCAGAATGTGAAAGATTTATATCTTCCAGGGAATGATTTTGTGTCCCTTCCTGAGTGCATTAAAGAGTGTGCTTATTTGGAGAGACTAAATCTGAGTGATTGCAAGAGGCTAAGAGACATACCAGAGCTGCCATCAACGTTGCAGCATATAGCTGCAGAGGATTGCACGTCATTAACTACAGAGTCGTTAGACCGTTTATGGTCTCAGGCAAGAAACAGCTCTTTCGTGGGTATAGGTATGCCAGCAACAACATTTCCAGAATGGTTTGACTATTGCTGTGAAGGAGCAACATTGTGTTTTCGTGTTCGAGGAAAAATTTTCCCTCATATTTTCGTGGCGCTTGAGTCGGAGAAATCCAACACAAGTACGACATACTTGTTCAAAGTTTTCTTGAGCATCAATGGTCGCAACATACCATGCAACCTAAGTGATGATGATTATGGTAGTTTTGTTGAACGGGAAGAAGTTCGTGATTTGGAGTCTTTTTTTGGTAAACAAGGTCATGTGTTTCTCTCGGATCTAGAATGGAATTTTAATGATGAAGAGTTAGAGGGGCTTAACAAGTTTCTGGGACTCGATTGGAATGACGTGGAGATACATTTTACATGTGACCCACCTGGTATCTCCATAGTTAACTGTGGTGTTTATGTCGTCGATAAGGAGTAA	3150	0.3962	MAIQVPAISSLGFTSKTKYRYDVFLSFRGEDTRHSFTEILYNALRRKGINAFIDDKKLGKGEEISPTLLKAIERSRISIIVFSTNYATSTWCLDELAHIIRCKKEKNQLVMPIFYKVDPMDVRFQRNSFGEAMAAHEVGRFKNEAEKVCKWRSALYEAASLSSAWLFGEGNKVGFIERIVEEAYSMLPPKRFHNTDHLVGLEPRVEELMSIINKSDDLVCMLGIYGTGGIGKTTLSKALYNSIFHKFDGACFLFDVREESNKYQGIIHLQQTLLSEVLEEKRMKFSSADEGISNIKHRLSHKNVLLVLDDVDEVEQLEQLAGGCDWFGRGSKIIVTTRNKQLLIACNVKNTYEMKKLNEDDSLELFCSHAFRMSQPPKGYENMSARVIRYVRGLPLALKLVGSNLTHKNLEEWRSTLERYERIQERTIHEVLKISYDCLQDAAKRIFLDIACFFKYEILEFVEDILEACQHGARFYIEVLVDKSLINIDDNNGFLYMHDLIQQMGKEVVRQEASSPGERSRLWHYKDVVQVLCENLGSSNIEGIILNPPQQEKVEWDGLAFEKMNNLKILIVRNAQFSTSPKCFPNSLRLLDWKGYPSATLPPDFSPSRLVCFKLYGSLFTLEEPFKKFEYVTDMDFSLCELITEVPDLSQFQSLKTLSFRECHNLIKVHDSVGCLSKLERLDVSECTKLTRFPREINMTSLQELDLSHCKSLDYFPSIVGKMEYLMQILPEDTAITELPPSIGNLPELDRLVLSSCTYLRELPISLLKLEYLKELELSGTQHACIISLITVMQQSQPVGFSCSNLENLDLANCGLLDEDLHVILTCFQNVKDLYLPGNDFVSLPECIKECAYLERLNLSDCKRLRDIPELPSTLQHIAAEDCTSLTTESLDRLWSQARNSSFVGIGMPATTFPEWFDYCCEGATLCFRVRGKIFPHIFVALESEKSNTSTTYLFKVFLSINGRNIPCNLSDDDYGSFVEREEVRDLESFFGKQGHVFLSDLEWNFNDEELEGLNKFLGLDWNDVEIHFTCDPPGISIVNCGVYVVDKE	1049

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g1973	1049	Gene3D	-	187	352	IPR027417	-
	Prci11g1973	1049	Gene3D	-	13	186	IPR035897	-
	Prci11g1973	1049	FunFam	Disease resistance protein (TIR-NBS-LRR class)	17	188	-	-
	Prci11g1973	1049	Gene3D	Ribonuclease Inhibitor	555	727	IPR032675	-
	Prci11g1973	1049	Gene3D	-	356	440	IPR042197	-
	Prci11g1973	1049	SUPERFAMILY	L domain-like	561	892	-	-
	Prci11g1973	1049	PRINTS	Disease resistance protein signature	221	236	-	-
	Prci11g1973	1049	PRINTS	Disease resistance protein signature	697	713	-	-
	Prci11g1973	1049	PRINTS	Disease resistance protein signature	298	312	-	-
	Prci11g1973	1049	PRINTS	Disease resistance protein signature	391	405	-	-
	Prci11g1973	1049	SMART	till_3	20	161	IPR000157	GO:0007165
	Prci11g1973	1049	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	190	450	IPR027417	-
	Prci11g1973	1049	SUPERFAMILY	"Winged helix" DNA-binding domain	427	532	IPR036390	-
	Prci11g1973	1049	Pfam	NB-ARC domain	204	441	IPR002182	GO:0043531
	Prci11g1973	1049	ProSiteProfiles	TIR domain profile.	19	187	IPR000157	GO:0007165
	Prci11g1973	1049	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	21	764	IPR044974	GO:0006952
	Prci11g1973	1049	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	161	IPR035897	-
	Prci11g1973	1049	Pfam	TIR domain	21	167	IPR000157	GO:0007165
	Prci11g1973	1049	Gene3D	Ribonuclease Inhibitor	728	902	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g1973	Prci-Chr11	17041660	17048079	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g1973	21	780	WRKY Transcription Factor Family	AT4G12020	30.295	2.43e-85	301

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g1973	-		-	pcin:129285870	2091.23