Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1970 ATGGCGATTCAAGTGGCGGCGCCATCATCATCCCTTGGCTTCACCAGCAGCAAAACCAAGTATAGATATGATGTTTTCCTCAGTTTCAGGGGTGAAGATACTCGACTCACCTTCACTGTTCGTCTCCACGATGCTCTGTGCCGGAAGGGAATCAACGCCTTCATCGACGACAAGAAGCTCGCGAAAGGGGAAGAGATCTCACCTACGCTTCTCAAAGCCATAGAGAAATCCAGGATTTCCATTATTGTGTTCTCCACCAACTATGCTACTTCAACGTGGTGCCTCGAGGAACTTGCCCGCATCGTTTGGTGTAGGAAGCAGAAGAACCAGGTGGTGATGCCCATCTTCTACAAGGTGGATCCCTTGGATGTTCAGAAGCAAAGAAATAGCTTTGGAGAAGCCATGGCTGATCATAAAGCTGGTAGGTTCAAGAATGAACAGGAGAAAGTGCAAAAATGGAGGGCCGCTTTGCATGAAGCTGCTAGTTTGTCACCAGCATGGCTTTTCGAAGATGGATGTGAATCTGGCTTTATTGAAAGGATTGTCGAACATGCATATTCTATGATACCTCCTAAACGCTTCCAGAACATTGATCATATGGTTGGACTTGAAACTCGCATAGAGGAAGTGATGTCACTTATGGATAAATCTGATGACCGAGTTTGTATGTTGGGCATTTATGGAACTGGTGGAATAGGAAAAACAACACTTGCAAAAGCTTTGTATAAATTAATCTTCTACCAATTTGACGGTGCATGTTTTTTGTTTGATGTTCGAGAAGAATCAAATAAATATCAAAGTATTATTCGTCTTCAACAGACACTTCTATCAGAGATTCTTGGGGAACAGAAAATGCAGCTTAATAGTGTTGATGAAGGAATCTCATACATAAAACACAGACTCTCTAGCAAGAAGGTTTTGTTGGTTCTGGATGATGTTGATGAGTTTAAACAGTTAGAACAACTTGCAGGGGGGCGTGATTGGTTTGGTTGTGGAAGCAAGATTATTATAACAACAAGAAATAAGGAATTGCTCATTGCACGTAATGTTGAGAAAACATATGAAGTGAAGGAGCTAAGTCGACTTTGCTCTCTTGAACTCTTCTGTTGGCATGCCTTTCGTATGAGCCAACCTCCAAATGGCTATGAAAATATGTCCAATCATGTTATTAGATATGTACATGGCCTTCCTCTAGCTTTAAAATTAGTAGGCTCCAATTTGGCACATAAGGACTTTGAAGAATGGAGATCTACGTTGGAACAGTACAAGAGAATCCCTGAAAGAACAATCCATGAGGTACTTAAGATAAGCTATGATTGCTTACCAGATGGTGCTAAGCGTGTTTTTCTAGATATTGCTTGTTTCTTTAAGAAGAAGGCATTAGAATTCATTGAAGACATACTAGAAGCTTGTGATGATGGGGCAAGGTTTTATATTGAAGTCCTTGTTGATAAATCTCTGATCACTATTGATGAAAATAGCAGTCGCTTGTACATGCATGATCTCATACAACAAATGGGCAAGGAGATTGTTAGGCAAGAAGGGCCATCAAATCTTGGTCAACGCAGTAGTAGATTATGGTATTACAGAGATGTTCTTGAAGTGCTACAAGAAAATTCAGGAAGCAGTAATATTGAAGGAATAATACTTGATCCACCTCATCAAGAAAAAGTGGAGTGGGGTGGTATAGCATTTGAGAAGATGAATAATCTCAAGATTCTCATCATTCGAAATGCCCAATTTTCAACAAGTTCTAAATATTTTCCAAATACTTTAAGATTACTTGACTGGAAAGGATATCCTTCTATGACTTTACCGCCAAATTTTTCTCCTTCGAAGCTAATTTGCTTGAAGTTAAATGGAAGTCAGTTCACATTGGAAGAGCCATTCAAGAAGTCTGAATTCATGACACATGTGACATATTTGGATTTCTCAAAGTGTCAATTCATTACCGAAGTACCAGATATGTCTCAGTTGCAAAATTTAAAAACAATGATCGTTAATAAATGTCTGAATCTGACCAAAGTTCACGATTCAGTGGGATCCCTCAGCAAGCTTGAAAGATTAGATGTTAGTGAATCAGAACCATGGCGATTCAAGTGGCGGCGCCATCATCATCCCTTGGCTTCACCAGCAGCAAAACCAAGTATAGATATGATGTTTTCCTCAGTTTCAGGGTGTGAAGATACTCGACTCTCACCTTCACTGTTCGTCTCCCACGATGCTCTGTGCCGGAAGGGAATCAACGCCTTCATCGACGACAAGAAGCTCGCGAAAGGGGAAGAGATCTCACCTACGCTTCTCAAAGCCATAGAGAAATCCAGGATTTCCATTATTGTGTTCTCCACCAACTATGCTACTTCAACGTGGTGCCTCGAGGAACTTGCCCGCATCGTTTGGTGTAGGAAGCAGAAGAACCAGAAGCAAAGAAATAGCTTTGGAGAAGCCATGGCTGATCATAAAGCTGGTAGGTTCAAGAATGAACAGGAGAAAGTGCAAAAATGGAGGGCCGCTTTGCATGAAGCTGCTAGTTTGTCACAGCATGCATGGGCTTTCGAAGATGGGATTGTCGAACATGCATATTCTATGATACCTCCTAAACGCTTCCAGAACATTGATCATATGGTTGGACTTGAAACTCGCATAGAGGAAGTGATGTCACTTATGGATAAATCTGATGACCGAACACTTCTATCAGAGATTCTTGGGGAACAGAAAATGCAGCTTAATAGTGTTGATGAAGGAATCTCATACATAAAACACAGACTCTCTAGCAAGAAGGTTTTGTTGGTTCTGGATGATGTTGATGAGTTTAAACAGTTAGAACAACTTGCAGGGGGGCGTGATTGGTTTGGTTGTGGAAGCAAGATTATTATAACAACAAGAAATAAGGAATTGCTCATTGCACGTAATGTTGAGAAAACATATGAAGTGAAGGAGCTAAGTCGACTTTGCTCTCTTGAACTCTTCTGTTGGCATGCCTTTCGTATGAGCCAACCTCCAAATGGCTATGAAAATATGTCCAATCATGTTATTAGATATGTACATGGCCTTCCTCTAGCTTTAAAATTAGTAGGCTCCAATTGGGCACATAAGGACTTTGAAGAATGGAGATCTACGTTGGAACAGTACAAGAGAATCCCTGAAAGAACAATCCATGAGGTACTTAAGATAAGCTATGATTGCTTACCAGATGGTGCTAAGCGTGTTTTTCTAGATATTGCTTGTTTCTTTAAGAAGAAGGCATTAGAATTCATTGAAGACATACTAGAAGCTTGTGATGATGGGGCAAGGTTTTATATTGAAGTCCTTGTTGATAAATCTCTGATCACTATTGATGAAAATAGCAGTCGCTTGTACATGCATGATCTCATACAACAAATGGGCAAGGAGATTGTTAGGCAAGAAGGGCCATCAAATCTTGGTCAACGCAGTAGATTATGGTATTACAGAGGAAGCAGTAATATTGAAGGAATAATACTTGATCCACCTCATCAAGAAAAAGTGGAGTGGGGTGGTATAGCATTTGAGAAGATGAATAATCTCAAGATTCTCATCATTCGAAATGCCCAATTTTCAACAAAAACAATGATCGTTAATAAATGTCTGAATCTGACCAAAGTTCACGATTCAGTGGGATCCCTCAGCAAGCTTGAAAGATTAGATGTTAGTGAATGCCCTATACTTACAAGCTTTCCACATGAAATCAACATGGCATCTCTTCAAGAGCTTAACCTCGAATTTTGCAAGAGTCTTGACTACTTCCCACATATAGTGGGAAAGATGGAACATCTCTTTATAGTTTCTGCAGTTATGACCGCTATTAAAGAGCTCCCACCTTCCATTGGAAATCTTCCACCGCTATGTAGTTTAGATTTAAGCTCCTGCACAAGTCTTAGGGAGCTTCCAAATAGCCTATTGACGTTGCCAAATCTTGAGGATCTTGGGTTGGAAGGCATTCACTCTCTTGGTAGAGAATCTTTGAAGACAATGATGCAACAGAGTCAATCAATTATTTGCTGTGAAAATATAGAAACCTTGAATCTCAGAAATTTCGGTCTATTGGATGAAGATCTTCACCTGACTTTGAAATGTTTTCAGAATGTGGAAGACCTGGATCTATCAGGGAATGATTTTGTGTCACTTCCTGAGTGCATTAAAGAGTGTGCGTATTTGGAGAGACTATCTCTGACTAACTGCAAGAGGCTAAGAGACATAGTGGAGCTGCCATCATCGCTGCAACACATAGCTGCGGAGAACTGCATGTCATTAACTATGGAATCGATAGGCCGTTTATGGTCTCAGGCGAAAGAGGGCTTTGCCATGGAAATCGTTATGCCGGCAACAACATTTCCTGATTGGTTAGACTATTGTTGTAAAGGAGCAAAATTGTCTTTTCGTGTTCGTGGAAATATGCCTCGTATCGTCTTCGCATACCAGACGGGGAAAGCAAACACAAAGTGGGTTTACATGGTGGAAGTTTTTATGAGCATCAACGGTTGTAATAAAATGCCATGGATACAAACTGATCGTGTTGCAAGGAAAAGGGGTCGTGTTTTGTATAAAGTAGGTGATCAAGGTCATGTATATTTCTTTGATCTGCTTAGTGACTTTAGTGAAGAGTTAGAGGAGCTTAATAAGTTTCTGGGATTGGATTGGAATGACGTGGACATACAAGTTACATGTGACCCACCTGATCTCTCCATAGTGAACTGTGGTATTTATGTGGATAAGCGACAAACGAACATGGAGAATATCCAGTTCAAGTCTCCTCTGCTCTCCATGAATGCTTCAACAACTTCATTGAAACGAAAAGCTATAGCTTCTCATCCAAACGAGCCACCCAGGAAGCACCTGAGAAGGTTCAAAGAGAAGACCAATTACACAAATAAAACGACAAGGAAATCTAAACGTCACCAGATTTTTCATTCGCAGTACAAGAGAAAGATGTTTTTTCCAATGGCTAAGCATCTTTGGAGAGCTTTGTACTCTTAG 4995 0.4046 MAIQVAAPSSSLGFTSSKTKYRYDVFLSFRGEDTRLTFTVRLHDALCRKGINAFIDDKKLAKGEEISPTLLKAIEKSRISIIVFSTNYATSTWCLEELARIVWCRKQKNQVVMPIFYKVDPLDVQKQRNSFGEAMADHKAGRFKNEQEKVQKWRAALHEAASLSPAWLFEDGCESGFIERIVEHAYSMIPPKRFQNIDHMVGLETRIEEVMSLMDKSDDRVCMLGIYGTGGIGKTTLAKALYKLIFYQFDGACFLFDVREESNKYQSIIRLQQTLLSEILGEQKMQLNSVDEGISYIKHRLSSKKVLLVLDDVDEFKQLEQLAGGRDWFGCGSKIIITTRNKELLIARNVEKTYEVKELSRLCSLELFCWHAFRMSQPPNGYENMSNHVIRYVHGLPLALKLVGSNLAHKDFEEWRSTLEQYKRIPERTIHEVLKISYDCLPDGAKRVFLDIACFFKKKALEFIEDILEACDDGARFYIEVLVDKSLITIDENSSRLYMHDLIQQMGKEIVRQEGPSNLGQRSSRLWYYRDVLEVLQENSGSSNIEGIILDPPHQEKVEWGGIAFEKMNNLKILIIRNAQFSTSSKYFPNTLRLLDWKGYPSMTLPPNFSPSKLICLKLNGSQFTLEEPFKKSEFMTHVTYLDFSKCQFITEVPDMSQLQNLKTMIVNKCLNLTKVHDSVGSLSKLERLDVSESEPWRFKWRRHHHPLASPAAKPSIDMMFSSVSGCEDTRLSPSLFVSHDALCRKGINAFIDDKKLAKGEEISPTLLKAIEKSRISIIVFSTNYATSTWCLEELARIVWCRKQKNQKQRNSFGEAMADHKAGRFKNEQEKVQKWRAALHEAASLSQHAWAFEDGIVEHAYSMIPPKRFQNIDHMVGLETRIEEVMSLMDKSDDRTLLSEILGEQKMQLNSVDEGISYIKHRLSSKKVLLVLDDVDEFKQLEQLAGGRDWFGCGSKIIITTRNKELLIARNVEKTYEVKELSRLCSLELFCWHAFRMSQPPNGYENMSNHVIRYVHGLPLALKLVGSNWAHKDFEEWRSTLEQYKRIPERTIHEVLKISYDCLPDGAKRVFLDIACFFKKKALEFIEDILEACDDGARFYIEVLVDKSLITIDENSSRLYMHDLIQQMGKEIVRQEGPSNLGQRSRLWYYRGSSNIEGIILDPPHQEKVEWGGIAFEKMNNLKILIIRNAQFSTKTMIVNKCLNLTKVHDSVGSLSKLERLDVSECPILTSFPHEINMASLQELNLEFCKSLDYFPHIVGKMEHLFIVSAVMTAIKELPPSIGNLPPLCSLDLSSCTSLRELPNSLLTLPNLEDLGLEGIHSLGRESLKTMMQQSQSIICCENIETLNLRNFGLLDEDLHLTLKCFQNVEDLDLSGNDFVSLPECIKECAYLERLSLTNCKRLRDIVELPSSLQHIAAENCMSLTMESIGRLWSQAKEGFAMEIVMPATTFPDWLDYCCKGAKLSFRVRGNMPRIVFAYQTGKANTKWVYMVEVFMSINGCNKMPWIQTDRVARKRGRVLYKVGDQGHVYFFDLLSDFSEELEELNKFLGLDWNDVDIQVTCDPPDLSIVNCGIYVDKRQTNMENIQFKSPLLSMNASTTSLKRKAIASHPNEPPRKHLRRFKEKTNYTNKTTRKSKRHQIFHSQYKRKMFFPMAKHLWRALYS 1664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1970 1664 Gene3D - 721 865 IPR035897 -
Prci11g1970 1664 Gene3D - 15 188 IPR035897 -
Prci11g1970 1664 Gene3D Ribonuclease Inhibitor 1163 1433 IPR032675 -
Prci11g1970 1664 Pfam TIR domain 742 848 IPR000157 GO:0007165
Prci11g1970 1664 Pfam TIR domain 23 185 IPR000157 GO:0007165
Prci11g1970 1664 SUPERFAMILY RNI-like 1176 1429 - -
Prci11g1970 1664 Gene3D - 879 975 IPR027417 -
Prci11g1970 1664 Gene3D - 189 353 IPR027417 -
Prci11g1970 1664 Gene3D Ribonuclease Inhibitor 559 698 IPR032675 -
Prci11g1970 1664 Gene3D - 981 1064 IPR042197 -
Prci11g1970 1664 Gene3D - 359 442 IPR042197 -
Prci11g1970 1664 ProSiteProfiles TIR domain profile. 21 189 IPR000157 GO:0007165
Prci11g1970 1664 SUPERFAMILY Toll/Interleukin receptor TIR domain 737 845 IPR035897 -
Prci11g1970 1664 PRINTS Disease resistance protein signature 657 673 - -
Prci11g1970 1664 PRINTS Disease resistance protein signature 223 238 - -
Prci11g1970 1664 PRINTS Disease resistance protein signature 393 407 - -
Prci11g1970 1664 PRINTS Disease resistance protein signature 300 314 - -
Prci11g1970 1664 Pfam NB-ARC domain 204 424 IPR002182 GO:0043531
Prci11g1970 1664 Pfam NB-ARC domain 902 1046 IPR002182 GO:0043531
Prci11g1970 1664 SUPERFAMILY "Winged helix" DNA-binding domain 429 537 IPR036390 -
Prci11g1970 1664 SMART till_3 717 845 IPR000157 GO:0007165
Prci11g1970 1664 SMART till_3 22 163 IPR000157 GO:0007165
Prci11g1970 1664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 452 IPR027417 -
Prci11g1970 1664 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 163 IPR035897 -
Prci11g1970 1664 ProSiteProfiles TIR domain profile. 716 864 IPR000157 GO:0007165
Prci11g1970 1664 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 721 889 IPR044974 GO:0006952
Prci11g1970 1664 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Prci11g1970 1664 SUPERFAMILY L domain-like 549 693 - -
Prci11g1970 1664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 874 1074 IPR027417 -
Prci11g1970 1664 SUPERFAMILY "Winged helix" DNA-binding domain 1051 1151 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1970 Prci-Chr11 16992538 17012319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1970 14 670 WRKY Transcription Factor Family AT4G12020 30.609 1.02e-72 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1970 - - pcin:129286213 3326.95