LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci11g1969	ATGGCGATTCCAGTAGCCTCATCATCATCATCCTTCAGCTTCAACAGTGGAACCAGGTATAGATATGATGCTTTTCTGAGTTTCAGAGGCGAAGATACTCGCCACTCCTTCACTGAGATTCTCTACGACGCTTTGCGCCGTAAGGGAATCAACGCCTTCATTGACGACAAGAGACTTGGCAAAGGGGAAGAGATCTCTCCTACGCTTCTCAAAGCCATAGAGAGATCCAGGATTTCCATTATTGTCTTCTCTACCAACTACGCTACTTCCACATGGTGCCTCGAAGAACTCGCCCACATCGTTTGGTGTAGGAAGCAGAAGAAGCAGGTGGTGATGCCCATCTTTTACAAGGTAGATCCGTTGGATGTTCAGTATCAGAGAAATAGCTTTGAGGAAGCCATGGCTGCTCTTGAAGATAGGTTCAGCGATGACTTAGAGAAAGTGCGAAAATGGAGGTCTGCTTTGTCTGAAGCTGCTAGCTTGTCACCAGCATGGCTTTTTCAAGATGGATATGATCAGTTTGGGTTTATTGAAAACATTGTCCAAGGTGCATTTGTTACGCTGCCCCCTAAACGCTTTCAAAACACTGATTACACGGTTGGACTTGAGCCTCACATAGAAGAAGTGGTGTCACTTTTAGATAAATCTGATCATCGCGTTTGCATGTTGGGGATTCATGGAACTGGTGGAATTGGCAAAACAACTCTTGCAAAAGCTATCTACAATTCAATCTTCTACAAATTTGAAGGTTCGTGCTTTTTATTTGATATCAGAGAAGAATCAAACAAATTCCAAGGCATTGTTCGTCTTCAACAGACACTTCTATCAGAAATTCTTGAGGAAAAGAGGATGACATTTAGTAGTGTTTATGAAGGAATATCCAGAATAAAACACAGACTTTCTCATAAACAAGTTTTGTTGGTTCTTGATGATGTTGATCACGATGAACAATTAGAACAACTTGCAGGAGGGTGTGATTGGTTTGGCAATGGAAGCAAGGTCATTATTACAACAAGAAATAAGCAATTGCTAATTTCTCATAATATTGAACAGACATATGAAATGAAGGAGCTAAACAAGCATGCCTCTCTTGAACTCTTTTGTTGGCATGCCTTTCATGAGAGCCAACCTCCAAAAGGCTATCAAGATATGTCCAATTGTGTTGTGACCTATGTACAAGGTCTTCCTCTGGCTTTAAGATTAATAGGCTCCAATTTGGCACATAAAAGCTTAGAGGAATGGAGAACTACATTAAAACGATATGATCTGATCCCGAAAAAAACAATTCACGAGGTACTAAAGATAAGCTATGATTGCTTACAAGATGATGCTAAACGTATCTTTTTAGATATTGCTTGCTTTTTTAAAAAGGAGAAATTGGAATTCATCGAAGAAATACTACAAGCTTGTGATTATGGAGCAAGGTTTTATATCGAAGTTCTTGTTGAAAAGTCTCTAATAACTATCAATGATGAGAATGGTCGCTTGTATATGCATGATCTCATACAACAAATGGGAAGAGAGATTGTTCGGCGAGAGGCACCATCAGATATTGGTAAACGTAGTAGATTATGGTATTATAAAGATGTACTGAAAGCATTGTGTGAAAATTTAGGAAGCAACAAGATTGAAGGAATGATGCTTGATCCACCTCAACAACAAGGAGTGGAGTGGAGTGGCTTAGCCTTTGAGAAGATGAATAATCTTAAAATTCTTATTGTTCGAAATGCCCAATTCTCAACCAGTCCTAGATATTTCCCCAATAGCCTAAGATTACTTGATTGGGAGGGATATCCTTCGATGACCTTGCCACCAGATTTTTCTCCAGCAAAACTAGTTTGTTTCAAGTTGTATAGAAGTCTTTTCAGCTTGGAAGAACCATTCAAGAAGTTTGAACATGTGACACATATGGATTTCTCACATTGTGAATTCATAGCTGAAGTACCTGATATGTCTCAATTCCAAAGCTTAAGAAGATTGTTGTTTCAAGGGTGCCGCAATCTGATCAAAGTTCATGATTCAGTGGGATCTCTCTCTAGGTTGGTCCGATTAGATGTCAGTGAATGCACCAAACTTACAATCTTTCCACATGAAATCAACATGCCATCTCTTCAAGAGCTCAATCTCAGAGAATGCAAGAGTCTTGACTACTTCCCAAATATATTGGGAAAGATGGATTCACTAACTGATATTTTTGCAAGTGAAACTGCTATTATAGAGCTCCCACCTTCCATTGGATATCTTCCAGCTCTAGAAAGTTTGTTTATAAGGTCCTGCAAAAGTCTTAGGGAGCTTCCAAACAGCTTGTTGATGTTGCAAAATCTTAGCACGCTTGATTTGGGAGATATTCAACCTCATGGAAGGAAATCATTGAAGAGATTAATGCAAGAGAGCCGACCAGCTATTAGCTACACAAACTTAGAGTACTTGGATCTTGAGAATTGTGGTCTATTGGATGAAGATCTTTGCCTAACCCTGAATTGTTTTCAGAATGTGCAAGAGTTAAATCTGTCAAGGAATGATTTTGTGTCCCTTCCTGAGTGCATTAAAGAGTGTGCTAATCTGATAAAACTAGATGTGACTAATTGCAAGAGGCTAAGAGACATACCAGAGCTGCCATCAAAGTTGAAGGACATAAGGGCAGAGAATTGCACATCATTAACTATGGAGTCACTAGGGCATCTATGGTCTCAGGTGAAAAATTGCTTTTGCTTGGGAATCGGTTCACCAGCAACAACATTTCCTGATTGGTTCGACCATTGCTGCAAAGGAGGGATACTGTCTTTTGGTGTTCATGGGAAAATTTTCCCTCGCGTTGTCATTGCAATTAAGTCCTGGAAATCCAACACAAGGAAGAGACACTTCTTCCAAGTTTTTATGAGAATCAATGGTCGTAAAATGCCATGGATACAAAGTGATGCTGCTGATGCAAGTGAAGAAGGTCGTGTGTTTGTTTTCTTTGGTAAACCGGGCCATGTGTTTTTATTTGATCTGCTTAAGGATTTTAGGGAAGAAGAGTTGGAGAGGCTTAATAAGTTTCTAAAATTGGATTGGAATGATGTGGAGATACAAGTAACCTGTCTCCCACATGATATCGCCGTAGTTAAGTGTGGAATTTATGTGGACAAGCAACAAACGAACATGGAGAATGTCCAGTTCAAGTCTCCAGTGATATCAAGAACTTCACTAAAACGCAGGGCAATAGCTTCTCCTCCTAATAAACCACCCAAGAAGCTCTTGAGAAAGTTCAAGGCTACTGATGAAAGAAAACTCAATAACACAAAGAAAGGGACAAGGAGAAGTAAACCACTCCAAAATTTTCACTCATGGTACAAGAAAAAGGTATTTTTTCTGATGGGTAAGCATCTTTGGAGATTCTTGTATTATTAG	3390	0.395	MAIPVASSSSSFSFNSGTRYRYDAFLSFRGEDTRHSFTEILYDALRRKGINAFIDDKRLGKGEEISPTLLKAIERSRISIIVFSTNYATSTWCLEELAHIVWCRKQKKQVVMPIFYKVDPLDVQYQRNSFEEAMAALEDRFSDDLEKVRKWRSALSEAASLSPAWLFQDGYDQFGFIENIVQGAFVTLPPKRFQNTDYTVGLEPHIEEVVSLLDKSDHRVCMLGIHGTGGIGKTTLAKAIYNSIFYKFEGSCFLFDIREESNKFQGIVRLQQTLLSEILEEKRMTFSSVYEGISRIKHRLSHKQVLLVLDDVDHDEQLEQLAGGCDWFGNGSKVIITTRNKQLLISHNIEQTYEMKELNKHASLELFCWHAFHESQPPKGYQDMSNCVVTYVQGLPLALRLIGSNLAHKSLEEWRTTLKRYDLIPKKTIHEVLKISYDCLQDDAKRIFLDIACFFKKEKLEFIEEILQACDYGARFYIEVLVEKSLITINDENGRLYMHDLIQQMGREIVRREAPSDIGKRSRLWYYKDVLKALCENLGSNKIEGMMLDPPQQQGVEWSGLAFEKMNNLKILIVRNAQFSTSPRYFPNSLRLLDWEGYPSMTLPPDFSPAKLVCFKLYRSLFSLEEPFKKFEHVTHMDFSHCEFIAEVPDMSQFQSLRRLLFQGCRNLIKVHDSVGSLSRLVRLDVSECTKLTIFPHEINMPSLQELNLRECKSLDYFPNILGKMDSLTDIFASETAIIELPPSIGYLPALESLFIRSCKSLRELPNSLLMLQNLSTLDLGDIQPHGRKSLKRLMQESRPAISYTNLEYLDLENCGLLDEDLCLTLNCFQNVQELNLSRNDFVSLPECIKECANLIKLDVTNCKRLRDIPELPSKLKDIRAENCTSLTMESLGHLWSQVKNCFCLGIGSPATTFPDWFDHCCKGGILSFGVHGKIFPRVVIAIKSWKSNTRKRHFFQVFMRINGRKMPWIQSDAADASEEGRVFVFFGKPGHVFLFDLLKDFREEELERLNKFLKLDWNDVEIQVTCLPHDIAVVKCGIYVDKQQTNMENVQFKSPVISRTSLKRRAIASPPNKPPKKLLRKFKATDERKLNNTKKGTRRSKPLQNFHSWYKKKVFFLMGKHLWRFLYY	1129

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci11g1969	1129	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	22	807	IPR044974	GO:0006952
	Prci11g1969	1129	SMART	till_3	21	161	IPR000157	GO:0007165
	Prci11g1969	1129	FunFam	Disease resistance protein (TIR-NBS-LRR class)	18	187	-	-
	Prci11g1969	1129	SUPERFAMILY	L domain-like	512	896	-	-
	Prci11g1969	1129	Pfam	NB-ARC domain	203	420	IPR002182	GO:0043531
	Prci11g1969	1129	Gene3D	-	16	189	IPR035897	-
	Prci11g1969	1129	Gene3D	-	190	352	IPR027417	-
	Prci11g1969	1129	Pfam	TIR domain	22	183	IPR000157	GO:0007165
	Prci11g1969	1129	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	191	451	IPR027417	-
	Prci11g1969	1129	SUPERFAMILY	Toll/Interleukin receptor TIR domain	16	161	IPR035897	-
	Prci11g1969	1129	PRINTS	Disease resistance protein signature	299	313	-	-
	Prci11g1969	1129	PRINTS	Disease resistance protein signature	222	237	-	-
	Prci11g1969	1129	PRINTS	Disease resistance protein signature	392	406	-	-
	Prci11g1969	1129	PRINTS	Disease resistance protein signature	699	715	-	-
	Prci11g1969	1129	Gene3D	-	357	441	IPR042197	-
	Prci11g1969	1129	Gene3D	Ribonuclease Inhibitor	717	908	IPR032675	-
	Prci11g1969	1129	Gene3D	Ribonuclease Inhibitor	531	716	IPR032675	-
	Prci11g1969	1129	ProSiteProfiles	TIR domain profile.	20	188	IPR000157	GO:0007165
	Prci11g1969	1129	SUPERFAMILY	"Winged helix" DNA-binding domain	428	534	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci11g1969	Prci-Chr11	16983478	16988960	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci11g1969	22	812	WRKY Transcription Factor Family	AT4G12020	30.086	2.23e-81	291

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci11g1969	-		-	pcin:129284776	1497.26