Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci11g1964 ATGTTTCAACGCAAGTCAATCGCATTTTTCCAAACCCAATACCTTGGTCTGTCAGTTATGATTACCCCAAATCAAGAGCTATCATCTGCTGGATCTTCCTCCAGCGAATCAACTCCCATTCACTACGATGTTTTCCTGAATTTTACAAGCGAATCAACATTCACTACCGCTCTCTGCGATGCTTTGGGCAACAAGGGAATCCGCAACATCTTCATCGACCCCAAGAAACTGAGGAAGAGGAAGAGGAAGAGGAAACAAGTTTTCGCATCACCTGATCCTCTTAGAGCAATTGGAAAATCAAAGGTTTCGATTCTTGTGTTCTCTGAGGATTATGTTTCTTCCCCTGAGTGCCTTGATGAGCTCGTCAAGATTATGAGATGTAGGAGGAAAAAGAAGCGAGTGGTTTTTCCGATCTTCTACAAAATAGAACCAACAGTTGTTCGGCATCAGAAAAGTGTGTATGAAGAAGCCATGGTTGCTCATCAACAGAGCTTCGGAGACGAACGGGTTCAGAAATGGAAGTCGGCTTTGAAGGAAGCCGCCGGTTTGTCCGGATGGCATTTTGAACAAGGATCTGAATATGACTTCGTTGAGAAGATTGTTGAAGCAGCGTTTTCCAAGTTACCTCCTAAACGCTTACATACTGGGGAGCATATAGTTGGACTCGACACTTGCATGGAAGATGTGACTTCAGTTCTTGATACTGTGTCTGTTTTGGGAATTCATGGAACTGCGGGAGTTGGCAAAACGACACTTGCCAAAGCTGTATACAATTCAATTGTCCACCAATTTGAAGAGGCGTGTTTTCTTTTCAACATCAGAGAAGCTTCAAAACAACGCAAAGGCATCCTACGTCTTCAAAAGACGCTTCTATCAGAGATTCTTGATGAGAAGAAGAAGATCAAGTTAAGAAGTGTTGATGAAGGGATCTCTAAGATAAAGCAGAGGCTACACCATAAAAGAGTTCTTCTTGTTCTCGATGATGTGGATGAGATAGAACAGTTAGAACAACTTGCGGGATATTGTGGTTGGTGTGGAAATGGTAGCAAAATCATTGTAACAACAAGAAACAAGCAATTACTGATTGATGGTCATATTGATAATGAATATGGAATGAAGGAGCTAAACGACAATGACTCTCTCAAGCTTTTCTCTCGGTATGCCTTCCACTTGGACAAGCCTCCAGCAGAATATGAAGAAATGTCTAAACGTGTGGTGAGTTATGCACAAGGCCTTCCTTTGGCTTTGAAAGTGACGGGCTCCAAATTAAATCATAAAAGCATGGAAGCATGGAAATGTGCATTAGATCAATTGGAGAGACTTCCAGGAAGGAAGGTTGAAGATGTTCTCAAAATAATGGGAAAGTAG 1368 0.4196 MFQRKSIAFFQTQYLGLSVMITPNQELSSAGSSSSESTPIHYDVFLNFTSESTFTTALCDALGNKGIRNIFIDPKKLRKRKRKRKQVFASPDPLRAIGKSKVSILVFSEDYVSSPECLDELVKIMRCRRKKKRVVFPIFYKIEPTVVRHQKSVYEEAMVAHQQSFGDERVQKWKSALKEAAGLSGWHFEQGSEYDFVEKIVEAAFSKLPPKRLHTGEHIVGLDTCMEDVTSVLDTVSVLGIHGTAGVGKTTLAKAVYNSIVHQFEEACFLFNIREASKQRKGILRLQKTLLSEILDEKKKIKLRSVDEGISKIKQRLHHKRVLLVLDDVDEIEQLEQLAGYCGWCGNGSKIIVTTRNKQLLIDGHIDNEYGMKELNDNDSLKLFSRYAFHLDKPPAEYEEMSKRVVSYAQGLPLALKVTGSKLNHKSMEAWKCALDQLERLPGRKVEDVLKIMGK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci11g1964 455 PRINTS Disease resistance protein signature 409 423 - -
Prci11g1964 455 PRINTS Disease resistance protein signature 238 253 - -
Prci11g1964 455 PRINTS Disease resistance protein signature 316 330 - -
Prci11g1964 455 ProSiteProfiles NACHT-NTPase domain profile. 237 332 IPR007111 -
Prci11g1964 455 Pfam NB-ARC domain 236 440 IPR002182 GO:0043531
Prci11g1964 455 Pfam TIR domain 42 211 IPR000157 GO:0007165
Prci11g1964 455 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 186 IPR035897 -
Prci11g1964 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 452 IPR027417 -
Prci11g1964 455 Gene3D - 210 366 IPR027417 -
Prci11g1964 455 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 445 IPR044974 GO:0006952
Prci11g1964 455 Gene3D - 40 209 IPR035897 -
Prci11g1964 455 SMART AAA_5 235 381 IPR003593 GO:0016887
Prci11g1964 455 Gene3D - 374 453 IPR042197 -
Prci11g1964 455 ProSiteProfiles TIR domain profile. 40 208 IPR000157 GO:0007165
Prci11g1964 455 SMART till_3 41 183 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci11g1964 Prci-Chr11 16961225 16965211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci11g1964 82 421 WRKY Transcription Factor Family AT4G12020 28.902 1.34e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci11g1964 - - pcin:129286951 896.345